Atomistry » Nickel » PDB 2w94-2zpl » 2xau
Atomistry »
  Nickel »
    PDB 2w94-2zpl »
      2xau »

Nickel in PDB 2xau: Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp

Protein crystallography data

The structure of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp, PDB code: 2xau was solved by H.Walbott, S.Mouffok, R.Capeyrou, S.Lebaron, H.Van Tilbeurgh, Y.Henry, N.Leulliot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.25 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.551, 117.551, 254.605, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 22.4

Other elements in 2xau:

The structure of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp (pdb code 2xau). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp, PDB code: 2xau:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 2xau

Go back to Nickel Binding Sites List in 2xau
Nickel binding site 1 out of 2 in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1752

b:35.7
occ:0.93
NE2 A:HIS479 2.0 39.3 1.0
O A:HOH2545 2.7 44.4 1.0
CE1 A:HIS479 2.9 41.5 1.0
CD2 A:HIS479 3.0 34.2 1.0
ND1 A:HIS479 4.1 38.0 1.0
CG A:HIS479 4.1 33.7 1.0

Nickel binding site 2 out of 2 in 2xau

Go back to Nickel Binding Sites List in 2xau
Nickel binding site 2 out of 2 in the Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of the PRP43P Deah-Box Rna Helicase in Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni1750

b:42.4
occ:0.85
NE2 B:HIS479 2.0 46.7 1.0
CE1 B:HIS479 2.9 43.5 1.0
CD2 B:HIS479 3.1 42.2 1.0
ND1 B:HIS479 4.0 42.9 1.0
CG B:HIS479 4.2 42.0 1.0

Reference:

H.Walbott, S.Mouffok, R.Capeyrou, S.Lebaron, O.Humbert, H.Van Tilbeurgh, Y.Henry, N.Leulliot. PRP43P Contains A Processive Helicase Structural Architecture with A Specific Regulatory Domain. Embo J. V. 29 2194 2010.
ISSN: ISSN 0261-4189
PubMed: 20512115
DOI: 10.1038/EMBOJ.2010.102
Page generated: Wed Dec 16 01:20:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy