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Nickel in PDB 2xio: Structure of Putative Deoxyribonuclease TATDN1 Isoform A

Protein crystallography data

The structure of Structure of Putative Deoxyribonuclease TATDN1 Isoform A, PDB code: 2xio was solved by J.R.C.Muniz, R.Cocking, S.Puranik, T.Krojer, J.Raynor, M.Vollmar, F.Vondelft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, W.W.Yue, K.L.Kavanagh, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.42 / 1.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.480, 50.940, 155.240, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.2

Other elements in 2xio:

The structure of Structure of Putative Deoxyribonuclease TATDN1 Isoform A also contains other interesting chemical elements:

Sodium (Na) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A (pdb code 2xio). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A, PDB code: 2xio:

Nickel binding site 1 out of 1 in 2xio

Go back to Nickel Binding Sites List in 2xio
Nickel binding site 1 out of 1 in the Structure of Putative Deoxyribonuclease TATDN1 Isoform A


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Putative Deoxyribonuclease TATDN1 Isoform A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1298

b:19.2
occ:1.00
NE2 A:HIS252 2.0 14.8 1.0
CE1 A:HIS252 2.9 14.8 1.0
CD2 A:HIS252 3.1 13.2 1.0
ND1 A:HIS252 4.1 14.3 1.0
CG A:HIS252 4.2 13.0 1.0
O A:HOH2469 4.3 22.9 1.0
OE1 A:GLU249 4.3 22.5 0.5
OE2 A:GLU249 4.5 21.8 0.5
O A:HOH2479 4.5 27.8 1.0
CE A:LYS245 4.6 45.8 1.0
CB A:PRO243 4.7 12.1 0.5
CB A:PRO243 4.7 13.1 0.5
CD A:GLU249 4.7 28.8 0.5

Reference:

J.R.C.Muniz, R.Cocking, S.Puranik, T.Krojer, J.Raynor, M.Vollmar, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, W.W.Yue, K.L.Kavanagh, U.Oppermann. Structure of Putative Deoxyribonuclease TATDN1 Isoform A To Be Published.
Page generated: Thu Oct 29 06:18:35 2020
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