Nickel in PDB 2y39: Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs

The structure of Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs, PDB code: 2y39 was solved by J.Trepreau, E.Girard, A.P.Maillard, E.De Rosny, I.Petit-Haertlein, R.Kahn, J.Coves, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.589 / 1.41
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	32.198, 32.198, 195.986, 90.00, 90.00, 90.00
R / Rfree (%)	17.95 / 19.78

The binding sites of Nickel atom in the Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs (pdb code 2y39). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs, PDB code: 2y39:

Nickel binding site 1 out of 1 in the Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Ni-Bound Form of Cupriavidus Metallidurans CH34 Cnrxs within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni150 b:6.8 occ:1.00 NE2 A:HIS42 2.1 7.7 1.0 NE2 A:HIS46 2.1 6.1 1.0 NE2 A:HIS119 2.2 6.4 1.0 OE2 A:GLU63 2.2 7.0 1.0 OE1 A:GLU63 2.2 10.2 1.0 SD A:MET123 2.5 10.1 1.0 CD A:GLU63 2.5 8.8 1.0 CE1 A:HIS42 3.0 9.7 1.0 CE1 A:HIS46 3.1 6.7 1.0 CD2 A:HIS119 3.1 7.0 1.0 CD2 A:HIS42 3.1 7.3 1.0 CD2 A:HIS46 3.1 6.5 1.0 CE1 A:HIS119 3.2 7.2 1.0 CG A:MET123 3.3 6.6 1.0 CE A:MET123 3.4 12.1 1.0 CG A:GLU63 4.0 9.7 1.0 ND1 A:HIS42 4.2 10.6 1.0 ND1 A:HIS46 4.2 8.1 1.0 CG A:HIS42 4.2 8.3 1.0 CG A:HIS119 4.2 5.7 1.0 ND1 A:HIS119 4.2 5.7 1.0 CG A:HIS46 4.3 8.2 1.0 O A:HOH2053 4.3 16.7 1.0 CB A:MET123 4.7 6.6 1.0 O A:HOH2054 4.8 21.7 1.0 CB A:GLU63 4.8 11.2 1.0

J.Trepreau, E.Girard, A.P.Maillard, E.De Rosny, I.Petit-Haertlein, R.Kahn, J.Coves. Structural Basis For Metal Sensing By Cnrx. J.Mol.Biol. V. 408 766 2011.
ISSN: ISSN 0022-2836
PubMed: 21414325
DOI: 10.1016/J.JMB.2011.03.014