Nickel in PDB 2yjl: Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa

The structure of Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa, PDB code: 2yjl was solved by T.Izore, C.Perdu, V.Job, I.Atree, E.Faudry, A.Dessen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.54 / 1.81
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	124.155, 48.358, 71.602, 90.00, 96.92, 90.00
R / Rfree (%)	21.691 / 26.224

The binding sites of Nickel atom in the Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa (pdb code 2yjl). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa, PDB code: 2yjl:

Nickel binding site 1 out of 1 in the Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structural Characterization of A Secretin Pilot Protein From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni160 b:65.0 occ:1.00 N A:GLY35 3.5 23.7 1.0 CA A:GLY34 3.5 19.9 1.0 O A:HOH2008 3.7 27.9 1.0 NH1 A:ARG119 3.9 51.7 1.0 NH2 A:ARG119 3.9 53.7 1.0 C A:GLY34 4.0 24.1 1.0 CB A:PRO71 4.3 23.7 1.0 CD A:PRO71 4.4 28.2 1.0 N A:PRO71 4.4 26.6 1.0 CZ A:ARG119 4.4 52.3 1.0 CA A:GLY35 4.5 24.4 1.0 CG A:PRO71 4.6 27.7 1.0 CA A:PRO71 4.6 25.2 1.0 C A:LEU70 4.7 23.6 1.0 O A:LEU70 4.8 25.7 1.0 N A:GLY34 4.8 22.6 1.0

T.Izore, C.Perdu, V.Job, I.Atree, E.Faudry, A.Dessen. Structural Characterization and Membrane Localization of Exsb From the Type III Secretion System (T3SS) of Pseudomonas Aeruginosa J.Mol.Biol. V. 413 236 2011.
ISSN: ISSN 0022-2836
PubMed: 21839744
DOI: 10.1016/J.JMB.2011.07.043