Nickel in PDB 3egj: N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.

All present enzymatic activity of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.:
3.5.1.25;

The structure of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae., PDB code: 3egj was solved by J.Osipiuk, N.Maltseva, J.Stam, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.20 / 2.90
Space group	P 43 2 2
Cell size a, b, c (Å), α, β, γ (°)	77.001, 77.001, 282.549, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 24.7

The binding sites of Nickel atom in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. (pdb code 3egj). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae., PDB code: 3egj:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:67.7 occ:1.00 NE2 A:HIS192 2.3 30.3 1.0 NE2 A:HIS213 2.5 27.7 1.0 OE1 A:GLU128 2.8 40.1 1.0 CD2 A:HIS192 2.9 27.7 1.0 O B:HOH405 3.0 24.2 1.0 OE2 A:GLU128 3.1 39.8 1.0 CD A:GLU128 3.2 38.5 1.0 CD2 A:HIS213 3.4 25.9 1.0 CE1 A:HIS213 3.5 26.8 1.0 CE1 A:HIS140 3.5 52.4 1.0 CE1 A:HIS192 3.5 28.1 1.0 NE2 A:HIS140 3.6 52.3 1.0 CG A:HIS192 4.1 25.3 1.0 NE2 A:GLN59 4.3 23.4 1.0 ND1 A:HIS192 4.4 27.3 1.0 CG A:GLU128 4.5 35.7 1.0 ND1 A:HIS213 4.6 27.0 1.0 CG A:HIS213 4.6 24.3 1.0 ND1 A:HIS140 4.7 52.8 1.0 CD2 A:HIS140 4.9 52.6 1.0 OD2 A:ASP270 4.9 31.8 1.0

Nickel binding site 2 out of 2 in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni402 b:93.2 occ:1.00 NE2 B:HIS213 2.4 26.5 1.0 OE2 B:GLU128 2.6 31.3 1.0 NE2 B:HIS192 2.7 33.5 1.0 CE1 B:HIS192 2.8 33.0 1.0 O B:HOH406 2.9 16.7 1.0 CD2 B:HIS213 3.3 25.6 1.0 CE1 B:HIS213 3.5 26.1 1.0 CD B:GLU128 3.7 32.8 1.0 NE2 B:GLN59 4.0 30.6 1.0 CD2 B:HIS192 4.0 32.1 1.0 ND1 B:HIS192 4.1 31.4 1.0 OE1 B:GLU128 4.2 34.4 1.0 OD2 B:ASP270 4.3 26.5 1.0 CG B:HIS213 4.5 24.3 1.0 ND1 B:HIS213 4.6 26.5 1.0 CG B:HIS192 4.7 30.4 1.0 OD1 B:ASP270 4.8 30.6 1.0 CG B:ASP270 4.9 27.5 1.0 CG2 B:THR212 4.9 25.2 1.0 CG B:GLU128 5.0 32.6 1.0

J.Osipiuk, N.Maltseva, J.Stam, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. To Be Published.