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Nickel in PDB 3egj: N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.

Enzymatic activity of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.

All present enzymatic activity of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.:
3.5.1.25;

Protein crystallography data

The structure of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae., PDB code: 3egj was solved by J.Osipiuk, N.Maltseva, J.Stam, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.20 / 2.90
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 77.001, 77.001, 282.549, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 24.7

Nickel Binding Sites:

The binding sites of Nickel atom in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. (pdb code 3egj). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae., PDB code: 3egj:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3egj

Go back to Nickel Binding Sites List in 3egj
Nickel binding site 1 out of 2 in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:67.7
occ:1.00
NE2 A:HIS192 2.3 30.3 1.0
NE2 A:HIS213 2.5 27.7 1.0
OE1 A:GLU128 2.8 40.1 1.0
CD2 A:HIS192 2.9 27.7 1.0
O B:HOH405 3.0 24.2 1.0
OE2 A:GLU128 3.1 39.8 1.0
CD A:GLU128 3.2 38.5 1.0
CD2 A:HIS213 3.4 25.9 1.0
CE1 A:HIS213 3.5 26.8 1.0
CE1 A:HIS140 3.5 52.4 1.0
CE1 A:HIS192 3.5 28.1 1.0
NE2 A:HIS140 3.6 52.3 1.0
CG A:HIS192 4.1 25.3 1.0
NE2 A:GLN59 4.3 23.4 1.0
ND1 A:HIS192 4.4 27.3 1.0
CG A:GLU128 4.5 35.7 1.0
ND1 A:HIS213 4.6 27.0 1.0
CG A:HIS213 4.6 24.3 1.0
ND1 A:HIS140 4.7 52.8 1.0
CD2 A:HIS140 4.9 52.6 1.0
OD2 A:ASP270 4.9 31.8 1.0

Nickel binding site 2 out of 2 in 3egj

Go back to Nickel Binding Sites List in 3egj
Nickel binding site 2 out of 2 in the N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni402

b:93.2
occ:1.00
NE2 B:HIS213 2.4 26.5 1.0
OE2 B:GLU128 2.6 31.3 1.0
NE2 B:HIS192 2.7 33.5 1.0
CE1 B:HIS192 2.8 33.0 1.0
O B:HOH406 2.9 16.7 1.0
CD2 B:HIS213 3.3 25.6 1.0
CE1 B:HIS213 3.5 26.1 1.0
CD B:GLU128 3.7 32.8 1.0
NE2 B:GLN59 4.0 30.6 1.0
CD2 B:HIS192 4.0 32.1 1.0
ND1 B:HIS192 4.1 31.4 1.0
OE1 B:GLU128 4.2 34.4 1.0
OD2 B:ASP270 4.3 26.5 1.0
CG B:HIS213 4.5 24.3 1.0
ND1 B:HIS213 4.6 26.5 1.0
CG B:HIS192 4.7 30.4 1.0
OD1 B:ASP270 4.8 30.6 1.0
CG B:ASP270 4.9 27.5 1.0
CG2 B:THR212 4.9 25.2 1.0
CG B:GLU128 5.0 32.6 1.0

Reference:

J.Osipiuk, N.Maltseva, J.Stam, W.F.Anderson, A.Joachimiak. X-Ray Crystal Structure of N-Acetylglucosamine-6-Phosphate Deacetylase From Vibrio Cholerae. To Be Published.
Page generated: Fri Sep 25 08:21:36 2020
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