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Nickel in PDB 3ffo: F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man

Protein crystallography data

The structure of F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man, PDB code: 3ffo was solved by L.Buts, A.De Boer, J.D.M.Olsson, W.Jonckheere, M.De Kerpel, E.De Genst, Y.Guerardel, R.Willaert, L.Wyns, M.Wuhrer, S.Oscarson, H.De Greve, J.Bouckaert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.92 / 2.10
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 87.389, 87.389, 56.809, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 27.1

Nickel Binding Sites:

The binding sites of Nickel atom in the F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man (pdb code 3ffo). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man, PDB code: 3ffo:

Nickel binding site 1 out of 1 in 3ffo

Go back to Nickel Binding Sites List in 3ffo
Nickel binding site 1 out of 1 in the F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of F17B-G Lectin Domain with Bound Glcnac(BETA1-2)Man within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni263

b:93.7
occ:0.50
CE1 A:HIS23 3.1 85.1 1.0
ND1 A:HIS23 3.5 89.8 1.0
NE2 A:HIS23 4.2 81.5 1.0
CG A:HIS23 4.7 76.6 1.0

Reference:

E.Lonardi, K.Moonens, L.Buts, A.R.De Boer, J.D.M.Olsson, M.S.Weiss, E.Fabre, Y.Guerardel, A.M.Deelder, S.Oscarson, M.Wuhrer, J.Bouckaert. Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors For Fimbrial Adhesins of Enterotoxigenic Escherichia Coli. Biology (Basel) V. 2 894 2013.
ISSN: ESSN 2079-7737
PubMed: 24833052
DOI: 10.3390/BIOLOGY2030894
Page generated: Fri Sep 25 08:21:45 2020
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