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Nickel in PDB 3fh3: Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne

Protein crystallography data

The structure of Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne, PDB code: 3fh3 was solved by B.Nocek, Y.Kim, G.Joachimiak, J.Du, P.Gornicki, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.81 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.808, 79.628, 80.078, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne (pdb code 3fh3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne, PDB code: 3fh3:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3fh3

Go back to Nickel Binding Sites List in 3fh3
Nickel binding site 1 out of 2 in the Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1

b:49.4
occ:1.00
O B:HOH210 2.1 37.7 1.0
NE2 B:HIS99 2.1 50.0 1.0
NE2 A:HIS17 2.2 74.7 1.0
O A:HOH189 2.3 47.0 1.0
O A:HOH186 2.4 53.4 1.0
CE1 B:HIS99 3.0 46.2 1.0
CD2 B:HIS99 3.1 63.6 1.0
CE1 A:HIS17 3.1 86.2 1.0
CD2 A:HIS17 3.2 72.2 1.0
ND1 B:HIS99 4.2 64.2 1.0
O B:ASN97 4.2 50.2 1.0
CG B:HIS99 4.2 70.0 1.0
ND1 A:HIS17 4.3 84.8 1.0
CG A:HIS17 4.3 68.7 1.0
CB B:ARG162 4.4 70.7 1.0
CA B:ARG162 4.9 82.3 1.0

Nickel binding site 2 out of 2 in 3fh3

Go back to Nickel Binding Sites List in 3fh3
Nickel binding site 2 out of 2 in the Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni2

b:74.1
occ:1.00
NE2 A:HIS99 2.1 58.1 1.0
NE2 B:HIS17 2.1 82.2 1.0
O B:HOH208 2.2 52.0 1.0
O A:HOH184 2.4 65.4 1.0
O B:HOH222 2.7 58.9 1.0
CE1 B:HIS17 2.8 89.5 1.0
CE1 A:HIS99 3.0 53.8 1.0
CD2 A:HIS99 3.1 69.5 1.0
CD2 B:HIS17 3.2 73.4 1.0
ND1 B:HIS17 4.0 85.7 1.0
ND1 A:HIS99 4.1 74.3 1.0
CG B:HIS17 4.2 67.3 1.0
CG A:HIS99 4.2 78.6 1.0
O A:ASN97 4.3 62.7 1.0

Reference:

B.Nocek, Y.Kim, G.Joachimiak, J.Du, N.Maltseva, P.Gornicki, R.Jedrzejczak, A.Joachimiak. Crystal Structure of A Putative Ecf-Type Sigma Factor Negative Effector From Bacillus Anthracis Str. Sterne To Be Published.
Page generated: Thu Oct 29 06:19:45 2020
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