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Nickel in PDB 3fpu: The Crystallographic Structure of the Complex Between Evasin-1 and CCL3

Protein crystallography data

The structure of The Crystallographic Structure of the Complex Between Evasin-1 and CCL3, PDB code: 3fpu was solved by J.P.Shaw, J.M.Dias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.76
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 104.384, 104.384, 104.384, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 28.5

Nickel Binding Sites:

The binding sites of Nickel atom in the The Crystallographic Structure of the Complex Between Evasin-1 and CCL3 (pdb code 3fpu). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the The Crystallographic Structure of the Complex Between Evasin-1 and CCL3, PDB code: 3fpu:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 3fpu

Go back to Nickel Binding Sites List in 3fpu
Nickel binding site 1 out of 2 in the The Crystallographic Structure of the Complex Between Evasin-1 and CCL3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystallographic Structure of the Complex Between Evasin-1 and CCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni101

b:18.2
occ:0.17
NE2 A:HIS97 2.2 29.4 1.0
CE1 A:HIS97 3.2 37.6 1.0
CD2 A:HIS97 3.2 34.2 1.0
ND1 A:HIS97 4.3 36.0 1.0
CG A:HIS97 4.3 32.1 1.0

Nickel binding site 2 out of 2 in 3fpu

Go back to Nickel Binding Sites List in 3fpu
Nickel binding site 2 out of 2 in the The Crystallographic Structure of the Complex Between Evasin-1 and CCL3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of The Crystallographic Structure of the Complex Between Evasin-1 and CCL3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni102

b:15.9
occ:0.33
NE2 A:HIS100 2.1 14.1 1.0
NE2 A:HIS98 2.2 15.1 1.0
CE1 A:HIS100 3.1 15.6 1.0
CD2 A:HIS100 3.1 16.4 1.0
CE1 A:HIS98 3.1 15.8 1.0
CD2 A:HIS98 3.2 14.3 1.0
ND1 A:HIS100 4.2 16.6 1.0
CG A:HIS100 4.3 15.1 1.0
ND1 A:HIS98 4.3 16.5 1.0
CG A:HIS98 4.3 14.1 1.0

Reference:

J.M.Dias, C.Losberger, M.Deruaz, C.A.Power, A.E.I.Proudfoot, J.P.Shaw. Structural Basis of Chemokine Sequestration By A Tick Chemokine Binding Protein: the Crystal Structure of the Complex Between Evasin-1 and CCL3 Plos One V. 4 2009.
ISSN: ESSN 1932-6203
PubMed: 20041127
DOI: 10.1371/JOURNAL.PONE.0008514
Page generated: Fri Sep 25 08:21:55 2020
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