Chemical elements
  Nickel
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    Compounds
    PDB 1a5n-1g2a
    PDB 1g3v-1mn0
    PDB 1mro-1s9b
    PDB 1scr-1xmk
    PDB 1xu1-2cg5
    PDB 2cqz-2jih
    PDB 2jk8-2v4b
    PDB 2vbq-3c2q
    PDB 3c6c-3h85
      3c6c
      3c7j
      3cc8
      3cf4
      3cgm
      3cj2
      3cj3
      3cj4
      3csx
      3cu2
      3cur
      3cus
      3d34
      3d82
      3d9b
      3de9
      3di5
      3dkq
      3dp8
      3ds9
      3dse
      3dve
      3e3u
      3e7v
      3egj
      3esk
      3exx
      3eyy
      3f0a
      3ffo
      3fh3
      3fmd
      3fms
      3foo
      3fop
      3fpu
      3fwv
      3g4x
      3g4z
      3g50
      3g86
      3gb7
      3gc8
      3glx
      3gor
      3grf
      3gw7
      3h0n
      3h3x
      3h85
    PDB 3hdp-3kvb
    PDB 3l1m-3o00
    PDB 3o01-4ubp
    PDB 8icl-9ant

Nickel in the structure of Hepatitis C Virus Polymerase NS5B (Bk 1-570) With Thiazine Inhibitor (pdb 3g86)






The binding sites of Nickel atom in the structure of Hepatitis C Virus Polymerase NS5B (Bk 1-570) With Thiazine Inhibitor (pdb code 3g86). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 3g86 structure was solved by S.F.HARRIS, M.GHATE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)49.0-2.2
Space groupP212121
a (A)85.915
b (A)106.169
c (A)126.940
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19
Rfree (%)23.8


Nickel Binding Sites:

Nickel binding site 1 out of 2 in 3g86


Nickel binding site 1 out of 2 in 3g86
Click to enlarge
stereopicture of Nickel binding site 1 out of 2 in 3g86
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 3g86. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp62, A: Asp66, A: Hoh772, A: Hoh807, A: Hoh808,

conact list:


AtomAtomDistance (A)
NiO A:Asp624.75
NiCB A:Asp624.60
NiC A:Asp624.99
NiCB A:Asp664.44
NiOD2 A:Asp662.18
NiOD1 A:Asp663.34
NiCG A:Asp663.09
NiO A:Hoh7723.95
NiO A:Hoh8073.07
NiO A:Hoh8083.38

interactive model:


Nickel binding site 2 out of 2 in 3g86


Nickel binding site 2 out of 2 in 3g86
Click to enlarge
stereopicture of Nickel binding site 2 out of 2 in 3g86
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Nickel in the PDB 3g86. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp62, B: Asp66, B: Hoh709, B: Hoh790,

conact list:


AtomAtomDistance (A)
NiO B:Asp624.60
NiCB B:Asp624.68
NiCB B:Asp664.36
NiOD2 B:Asp662.12
NiOD1 B:Asp663.34
NiCG B:Asp663.04
NiO B:Hoh7093.85
NiO B:Hoh7902.81

interactive model:




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