Nickel in PDB 3glx: Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II)

The structure of Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II), PDB code: 3glx was solved by J.A.D'aquino, A.Denninger, A.Moulin, K.E.D'aquino, D.Ringe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.65 / 1.85
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.800, 63.800, 108.165, 90.00, 90.00, 120.00
R / Rfree (%)	22.1 / 27.1

The binding sites of Nickel atom in the Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II) (pdb code 3glx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II), PDB code: 3glx:

Nickel binding site 1 out of 1 in the Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure Analysis of the Dtxr(E175K) Complexed with Ni(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni551 b:17.2 occ:1.00 O2 A:PO4600 2.0 16.2 1.0 OE2 A:GLU83 2.0 17.9 1.0 ND1 A:HIS98 2.0 20.2 1.0 NE2 A:HIS79 2.2 19.8 1.0 CD A:GLU83 2.9 14.9 1.0 CE1 A:HIS98 2.9 22.1 1.0 P A:PO4600 3.1 21.9 1.0 CG A:HIS98 3.1 18.3 1.0 CD2 A:HIS79 3.1 18.5 1.0 CE1 A:HIS79 3.2 20.2 1.0 OE1 A:GLU83 3.2 14.7 1.0 O3 A:PO4600 3.4 24.2 1.0 O A:HOH232 3.6 22.6 1.0 CB A:HIS98 3.6 17.8 1.0 O4 A:PO4600 3.6 27.8 1.0 CA A:HIS98 4.0 18.3 1.0 O A:HOH271 4.0 40.0 1.0 NE2 A:HIS98 4.1 22.8 1.0 CD2 A:PHE128 4.2 17.5 1.0 CD2 A:HIS98 4.2 20.5 1.0 CG A:GLU83 4.2 14.8 1.0 ND1 A:HIS79 4.3 15.2 1.0 CG A:HIS79 4.3 15.6 1.0 O1 A:PO4600 4.4 25.9 1.0 CE2 A:PHE128 4.4 22.2 1.0 O A:HIS98 4.6 15.2 1.0 C A:HIS98 4.7 17.3 1.0

J.A.D'aquino, A.R.Denninger, A.G.Moulin, K.E.D'aquino, D.Ringe. Decreased Sensitivity to Changes in the Concentration of Metal Ions As the Basis For the Hyperactivity of Dtxr(E175K). J.Mol.Biol. V. 390 112 2009.
ISSN: ISSN 0022-2836
PubMed: 19433095
DOI: 10.1016/J.JMB.2009.05.003