Nickel in PDB 3hdp: Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum

All present enzymatic activity of Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum:
4.4.1.5;

The structure of Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum, PDB code: 3hdp was solved by L.Satyanarayana, S.Eswaramoorthy, S.K.Burley, S.Swaminathan, Newyork Sgx Research Center For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.17 / 2.06
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	70.269, 70.269, 66.589, 90.00, 90.00, 90.00
R / Rfree (%)	25.2 / 28.6

The binding sites of Nickel atom in the Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum (pdb code 3hdp). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum, PDB code: 3hdp:

Nickel binding site 1 out of 1 in the Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni129 b:28.0 occ:1.00 OE1 A:GLU52 2.1 29.3 1.0 OE2 A:GLU124 2.1 29.3 1.0 NE2 A:HIS5 2.3 27.4 1.0 NE2 A:HIS75 2.3 20.8 1.0 O A:HOH133 2.3 27.9 1.0 O A:HOH130 2.5 34.6 1.0 CD A:GLU124 3.0 29.6 1.0 CD A:GLU52 3.1 29.1 1.0 CE1 A:HIS5 3.1 27.0 1.0 CE1 A:HIS75 3.1 21.1 1.0 OE1 A:GLU124 3.3 30.4 1.0 CD2 A:HIS75 3.4 21.5 1.0 CD2 A:HIS5 3.4 27.4 1.0 OE2 A:GLU52 3.5 30.5 1.0 ND1 A:HIS5 4.3 28.5 1.0 ND1 A:HIS75 4.3 23.2 1.0 CB A:CYS77 4.4 25.2 1.0 CG A:GLU52 4.4 25.6 1.0 CG A:GLU124 4.4 29.5 1.0 CG A:HIS75 4.4 21.4 1.0 CG A:HIS5 4.4 28.9 1.0 CB A:GLU52 4.7 27.2 1.0 CA A:GLY7 4.7 24.4 1.0 CB A:GLU124 4.7 28.6 1.0 SG A:CYS77 4.9 26.1 1.0 CZ A:PHE114 4.9 32.8 1.0 CE2 A:PHE114 5.0 29.1 1.0

L.Satyanarayana, S.Eswaramoorthy, J.Honek, S.K.Burley, S.Swaminathan. Crystal Structure of the Ni(II)-Bound Glyoxalase-I From Clostridium Acetobutylicum. To Be Published.