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Nickel in PDB 3nv3: Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide

Protein crystallography data

The structure of Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide, PDB code: 3nv3 was solved by H.Yoshida, S.Kamitori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.50 / 1.57
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 71.003, 71.003, 49.741, 90.00, 90.00, 120.00
R / Rfree (%) 18.8 / 21.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide (pdb code 3nv3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide, PDB code: 3nv3:

Nickel binding site 1 out of 1 in 3nv3

Go back to Nickel Binding Sites List in 3nv3
Nickel binding site 1 out of 1 in the Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human Galectin-9 C-Terminal Crd in Complex with Biantennary Oligosaccharide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni401

b:13.1
occ:0.50
NE2 A:HIS320 2.1 12.3 1.0
O A:HOH17 2.1 16.7 1.0
CD2 A:HIS320 3.0 11.9 1.0
CE1 A:HIS320 3.2 13.1 1.0
O A:VAL321 4.2 14.9 1.0
CG A:HIS320 4.2 12.3 1.0
ND1 A:HIS320 4.2 13.1 1.0
OH A:TYR191 4.7 18.7 1.0

Reference:

H.Yoshida, M.Teraoka, N.Nishi, S.Nakakita, T.Nakamura, M.Hirashima, S.Kamitori. X-Ray Structures of Human Galectin-9 C-Terminal Domain in Complexes with A Biantennary Oligosaccharide and Sialyllactose J.Biol.Chem. V. 285 36969 2010.
ISSN: ISSN 0021-9258
PubMed: 20861009
DOI: 10.1074/JBC.M110.163402
Page generated: Thu Oct 29 06:21:19 2020
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