Nickel in PDB 3nzz: Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd

The structure of Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd, PDB code: 3nzz was solved by S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.Deguzman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.35 / 1.65
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	203.064, 52.121, 57.519, 90.00, 90.05, 90.00
R / Rfree (%)	21.1 / 24.5

The binding sites of Nickel atom in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd (pdb code 3nzz). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd, PDB code: 3nzz:

Nickel binding site 1 out of 1 in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1 b:22.2 occ:1.00 ND1 A:HIS37 2.0 23.3 1.0 N A:GLY36 2.1 29.1 1.0 N A:HIS37 2.2 28.5 1.0 O A:HOH390 2.2 27.5 1.0 O A:HOH355 2.3 24.8 1.0 CE1 A:HIS37 3.0 21.6 1.0 C A:GLY36 3.0 28.7 1.0 CA A:GLY36 3.0 29.4 1.0 CG A:HIS37 3.0 24.5 1.0 CA A:HIS37 3.2 28.1 1.0 CB A:HIS37 3.4 27.1 1.0 N A:MET38 3.8 29.2 1.0 C A:HIS37 4.0 29.1 1.0 NE2 A:HIS37 4.1 23.3 1.0 CD2 A:HIS37 4.1 21.6 1.0 O A:GLY36 4.2 29.6 1.0 CE A:MET38 4.8 33.6 1.0 CA A:MET38 5.0 30.4 1.0

S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.De Guzman. The Crystal Structures of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Deoxycholate and Chenodeoxycholate. Protein Sci. V. 20 75 2011.
ISSN: ISSN 0961-8368
PubMed: 21031487
DOI: 10.1002/PRO.537