Atomistry » Nickel » PDB 3nbk-3qsf » 3o00
Atomistry »
  Nickel »
    PDB 3nbk-3qsf »
      3o00 »

Nickel in PDB 3o00: Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S

Protein crystallography data

The structure of Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S, PDB code: 3o00 was solved by S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.Deguzman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.30 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 203.348, 52.146, 57.555, 90.00, 90.45, 90.00
R / Rfree (%) 20.6 / 24.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S (pdb code 3o00). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S, PDB code: 3o00:

Nickel binding site 1 out of 1 in 3o00

Go back to Nickel Binding Sites List in 3o00
Nickel binding site 1 out of 1 in the Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd-C244S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1

b:21.2
occ:1.00
N A:GLY36 1.9 30.6 1.0
ND1 A:HIS37 1.9 24.4 1.0
N A:HIS37 2.1 33.6 1.0
O A:HOH384 2.4 36.3 1.0
O A:HOH484 2.5 41.6 1.0
CA A:GLY36 2.9 32.7 1.0
CG A:HIS37 2.9 29.5 1.0
C A:GLY36 2.9 33.2 1.0
CE1 A:HIS37 2.9 27.4 1.0
CA A:HIS37 3.2 33.6 1.0
CB A:HIS37 3.3 32.4 1.0
N A:MET38 3.7 34.0 1.0
C A:HIS37 3.9 34.4 1.0
NE2 A:HIS37 4.0 29.9 1.0
CD2 A:HIS37 4.1 26.4 1.0
O A:GLY36 4.1 35.1 1.0
CG A:MET38 4.9 35.2 0.5
CA A:MET38 5.0 33.9 0.5
CG A:MET38 5.0 38.3 0.5
CA A:MET38 5.0 34.0 0.5
CE A:MET38 5.0 34.9 0.5

Reference:

S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.De Guzman. The Crystal Structures of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Deoxycholate and Chenodeoxycholate. Protein Sci. V. 20 75 2011.
ISSN: ISSN 0961-8368
PubMed: 21031487
DOI: 10.1002/PRO.537
Page generated: Wed Oct 9 17:40:31 2024

Last articles

Al in 7X24
Al in 7X22
Al in 7X21
Al in 7X20
Al in 7W7W
Al in 7VSH
Al in 7VPL
Al in 7TUB
Al in 7VQ7
Al in 7VOJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy