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Nickel in PDB 3o02: The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate

Protein crystallography data

The structure of The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate, PDB code: 3o02 was solved by S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.Deguzman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.90 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 202.216, 52.370, 57.316, 90.00, 90.20, 90.00
R / Rfree (%) 19.7 / 24.4

Nickel Binding Sites:

The binding sites of Nickel atom in the The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate (pdb code 3o02). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate, PDB code: 3o02:

Nickel binding site 1 out of 1 in 3o02

Go back to Nickel Binding Sites List in 3o02
Nickel binding site 1 out of 1 in the The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Chenodeoxycholate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1

b:21.6
occ:1.00
N A:GLY36 1.8 28.5 1.0
ND1 A:HIS37 1.9 20.8 1.0
N A:HIS37 2.1 29.4 1.0
CE1 A:HIS37 2.9 25.1 1.0
CA A:GLY36 2.9 29.5 1.0
CG A:HIS37 2.9 25.9 1.0
C A:GLY36 2.9 30.1 1.0
CA A:HIS37 3.2 29.5 1.0
CB A:HIS37 3.3 28.5 1.0
N A:MET38 3.6 29.9 1.0
C A:HIS37 3.9 30.1 1.0
NE2 A:HIS37 4.0 22.3 1.0
CD2 A:HIS37 4.0 22.8 1.0
O A:GLY36 4.1 31.2 1.0
CG A:MET38 4.7 31.0 0.5
CG A:MET38 4.7 33.6 0.5
CA A:MET38 4.8 29.8 0.5
CB A:MET38 4.8 30.1 0.5
CA A:MET38 4.9 30.1 0.5
CB A:MET38 4.9 30.9 0.5

Reference:

S.Chatterjee, D.Zhong, B.A.Nordhues, K.P.Battaile, S.Lovell, R.N.De Guzman. The Crystal Structures of the Salmonella Type III Secretion System Tip Protein Sipd in Complex with Deoxycholate and Chenodeoxycholate. Protein Sci. V. 20 75 2011.
ISSN: ISSN 0961-8368
PubMed: 21031487
DOI: 10.1002/PRO.537
Page generated: Fri Sep 25 08:31:12 2020
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