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Nickel in the structure of PHF2 Jumonji-Nog-Ni(II) (pdb 3pua)

The binding sites of Nickel atom in the structure of PHF2 Jumonji-Nog-Ni(II) (pdb code 3pua). This binding sites where shown with 5.0 Angstroms radius around Nickel atom.
The 3pua structure was solved by J.R.HORTON, A.K.UPADHYAY, H.HASHIMOTO, X.ZHANG, X.CHENG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)32.9-1.9
Space groupC121
a (A)109.575
b (A)65.767
c (A)66.612
alpha (°)90.00
beta (°)102.09
gamma (°)90.00
Rfactor (%)16.4
Rfree (%)21

Nickel Binding Sites:

Nickel binding site 1 out of 1 in 3pua

Nickel binding site 1 out of 1 in 3pua
Click to enlarge
stereopicture of Nickel binding site 1 out of 1 in 3pua
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Nickel in the PDB 3pua. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Nickel atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His249, A: Asp251, A: Tyr321, A: His335, A: Edo9, A: Oga454, A: Hoh462, A: Hoh598,

conact list:

AtomAtomDistance (A)
NiNE2 A:His2492.17
NiND1 A:His2494.27
NiCD2 A:His2493.11
NiCE1 A:His2493.18
NiCG A:His2494.28
NiCB A:Asp2514.43
NiOD2 A:Asp2513.30
NiOD1 A:Asp2512.10
NiCG A:Asp2513.04
NiCA A:Asp2514.82
NiCE2 A:Tyr3213.96
NiCD1 A:Tyr3214.99
NiCZ A:Tyr3213.09
NiCE1 A:Tyr3213.76
NiOH A:Tyr3212.12
NiCE1 A:His3354.68
NiO1 A:Edo94.91
NiC1 A:Edo94.59
NiN1 A:Oga4544.20
NiO2 A:Oga4542.20
NiC4 A:Oga4544.87
NiC1 A:Oga4542.84
NiO1 A:Oga4544.08
NiO2' A:Oga4542.15
NiC2 A:Oga4542.82
NiO A:Hoh4622.20
NiO A:Hoh5984.38

interactive model:

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