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Nickel in PDB 4b29: Crystal Structures of Dmsp Lyases Rddddp and Rndddqii

Protein crystallography data

The structure of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii, PDB code: 4b29 was solved by J.H.Hehemann, A.Law, L.Redecke, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 102.91 / 1.72
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 145.540, 145.540, 145.540, 90.00, 90.00, 90.00
R / Rfree (%) 16.176 / 17.572

Other elements in 4b29:

The structure of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii also contains other interesting chemical elements:

Bromine (Br) 5 atoms
Zinc (Zn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii (pdb code 4b29). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii, PDB code: 4b29:

Nickel binding site 1 out of 1 in 4b29

Go back to Nickel Binding Sites List in 4b29
Nickel binding site 1 out of 1 in the Crystal Structures of Dmsp Lyases Rddddp and Rndddqii


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structures of Dmsp Lyases Rddddp and Rndddqii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1206

b:39.5
occ:0.50
NE2 A:HIS42 2.0 28.0 1.0
O A:HOH2253 2.2 44.9 1.0
O A:HOH2093 2.4 57.7 1.0
CE1 A:HIS42 3.0 26.4 1.0
CD2 A:HIS42 3.0 26.1 1.0
O A:HOH2252 3.1 46.7 1.0
O A:HOH2092 3.2 50.1 1.0
ND1 A:HIS42 4.1 25.0 1.0
CG A:HIS42 4.1 21.5 1.0
NE2 A:HIS79 4.6 31.3 0.5
O A:HOH2042 4.8 36.7 1.0

Reference:

J.H.Hehemann, A.Law, L.Redecke, A.B.Boraston. Crystal Structures of Dmsp Lyases Rddddp and Rndddqii To Be Published.
Page generated: Wed Dec 16 01:29:06 2020

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