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Nickel in PDB 4c48: Crystal Structure of Acrb-Acrz Complex

Protein crystallography data

The structure of Crystal Structure of Acrb-Acrz Complex, PDB code: 4c48 was solved by D.Du, N.James, E.Klimont, B.F.Luisi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.67 / 3.30
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 145.010, 145.010, 538.340, 90.00, 90.00, 120.00
R / Rfree (%) 28.142 / 32.2

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Acrb-Acrz Complex (pdb code 4c48). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Acrb-Acrz Complex, PDB code: 4c48:

Nickel binding site 1 out of 1 in 4c48

Go back to Nickel Binding Sites List in 4c48
Nickel binding site 1 out of 1 in the Crystal Structure of Acrb-Acrz Complex


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Acrb-Acrz Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni2040

b:0.0
occ:1.00
OD2 A:ASP529 1.8 0.0 1.0
NE2 A:HIS525 2.0 0.6 1.0
CG A:ASP529 2.5 0.0 1.0
OD1 A:ASP529 2.5 0.0 1.0
CE1 A:HIS525 2.8 0.1 1.0
CD2 A:HIS525 3.2 0.0 1.0
CB A:ASP529 4.0 0.0 1.0
ND1 A:HIS525 4.0 0.2 1.0
CG A:HIS525 4.2 0.0 1.0
CA A:ASP529 5.0 0.0 1.0

Reference:

D.Du, Z.Wang, N.R.James, J.E.Voss, E.Klimont, T.Ohene-Agyei, H.Venter, W.Chiu, B.F.Luisi. Structure of the Acrab-Tolc Multidrug Efflux Pump. Nature V. 509 512 2014.
ISSN: ISSN 0028-0836
PubMed: 24747401
DOI: 10.1038/NATURE13205
Page generated: Wed Dec 16 01:29:17 2020

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