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Nickel in PDB 4cot: The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis

Enzymatic activity of The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis

All present enzymatic activity of The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis:
3.2.1.99;

Protein crystallography data

The structure of The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis, PDB code: 4cot was solved by C.E.Mcvey, M.J.Ferreira, B.Correia, S.Lahiri, D.Desanctis, M.A.Carrondo, P.F.Lindley, I.De Sa-Nogueira, C.M.Soares, I.Bento, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.164 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 51.190, 76.552, 58.073, 90.00, 112.60, 90.00
R / Rfree (%) 17.1 / 21.4

Nickel Binding Sites:

The binding sites of Nickel atom in the The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis (pdb code 4cot). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis, PDB code: 4cot:

Nickel binding site 1 out of 1 in 4cot

Go back to Nickel Binding Sites List in 4cot
Nickel binding site 1 out of 1 in the The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1470

b:21.5
occ:0.81
 O A:HOH2139 1.8 29.1 1.0
O A:HOH2025 2.0 22.4 1.0
O A:HOH2138 2.0 15.3 1.0
NE2 A:HIS173 2.1 32.0 1.0
OE1 A:GLN318 2.2 30.8 1.0
O A:HOH2017 2.3 24.6 1.0
HE22 A:GLN318 3.0 27.4 1.0
CE1 A:HIS173 3.1 21.4 1.0
CD2 A:HIS173 3.1 33.3 1.0
CD A:GLN318 3.1 22.8 1.0
HE1 A:HIS173 3.2 25.7 1.0
HD2 A:HIS173 3.3 40.0 1.0
NE2 A:GLN318 3.4 22.8 1.0
O A:HOH2137 3.7 28.1 1.0
O A:HOH2083 3.7 17.1 1.0
HB3 A:ASP38 3.9 18.2 1.0
O A:ASN319 3.9 16.7 1.0
HB2 A:ALA101 4.0 23.4 1.0
HA2 A:GLY225 4.0 23.0 1.0
ND1 A:HIS173 4.2 28.6 1.0
CG A:HIS173 4.2 32.2 1.0
HE21 A:GLN318 4.2 27.4 1.0
HD2 A:TYR227 4.3 28.1 1.0
O A:GLN318 4.3 19.5 1.0
O A:ASP38 4.4 18.8 1.0
HB2 A:SER40 4.4 27.2 1.0
C A:GLN318 4.5 15.8 1.0
O A:GLY225 4.5 19.9 1.0
HA3 A:GLY225 4.6 23.0 1.0
CG A:GLN318 4.6 23.8 1.0
C A:ASN319 4.6 15.9 1.0
HB3 A:GLN318 4.6 23.7 1.0
HA A:GLN318 4.6 20.4 1.0
HB2 A:TYR227 4.7 19.7 1.0
CA A:GLY225 4.7 19.1 1.0
HB3 A:SER320 4.7 20.0 1.0
O A:PRO39 4.7 17.1 1.0
HA A:ASP38 4.8 16.0 1.0
C A:ASP38 4.8 20.1 1.0
C A:GLY225 4.8 13.7 1.0
CB A:ASP38 4.8 15.2 1.0
N A:ASN319 4.8 17.6 1.0
CB A:ALA101 4.8 19.5 1.0
O A:PRO226 4.9 17.0 1.0
CB A:GLN318 4.9 19.8 1.0
CA A:GLN318 5.0 17.0 1.0
HD1 A:HIS173 5.0 34.3 1.0
HG2 A:GLN318 5.0 28.6 1.0
HA A:SER40 5.0 20.4 1.0
HB1 A:ALA101 5.0 23.4 1.0

Reference:

C.E.Mcvey, M.J.Ferreira, B.Correia, S.Lahiri, D.De Sanctis, M.A.Carrondo, P.F.Lindley, I.De Sa Nogueira, C.M.Soares, I.Bento. The Importance of the ABN2 Calcium Cluster in the Endo-1,5- Arabinanase Activity From Bacillus Subtilis. J.Biol.Inorg.Chem. V. 19 505 2014.
ISSN: ISSN 0949-8257
PubMed: 24549757
DOI: 10.1007/S00775-014-1105-X
Page generated: Wed Oct 9 18:03:07 2024

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