Atomistry » Nickel » PDB 4d00-4gu7 » 4diq
Atomistry »
  Nickel »
    PDB 4d00-4gu7 »
      4diq »

Nickel in PDB 4diq: Crystal Structure of Human NO66

Enzymatic activity of Crystal Structure of Human NO66

All present enzymatic activity of Crystal Structure of Human NO66:
1.14.11.27;

Protein crystallography data

The structure of Crystal Structure of Human NO66, PDB code: 4diq was solved by M.Vollmar, T.Krojer, S.Ng, E.Pilka, J.Bray, A.C.W.Pike, P.Filippakopoulos, A.Roos, C.H.Arrowsmith, E.Edwards, C.Bountra, F.Von Delft, U.Oppermann, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.46 / 2.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.674, 149.550, 105.311, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Human NO66 (pdb code 4diq). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Human NO66, PDB code: 4diq:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 4diq

Go back to Nickel Binding Sites List in 4diq
Nickel binding site 1 out of 2 in the Crystal Structure of Human NO66


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human NO66 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni700

b:49.1
occ:1.00
NE2 A:HIS340 2.1 50.1 1.0
O A:HOH835 2.2 50.8 1.0
O22 A:PD2701 2.2 32.9 1.0
OD2 A:ASP342 2.3 56.5 1.0
N1 A:PD2701 2.4 52.8 1.0
NE2 A:HIS405 2.4 42.3 1.0
CE1 A:HIS340 2.9 53.3 1.0
C21 A:PD2701 3.1 43.9 1.0
CG A:ASP342 3.2 47.8 1.0
C2 A:PD2701 3.2 44.5 1.0
CD2 A:HIS340 3.2 54.7 1.0
C6 A:PD2701 3.3 47.3 1.0
CD2 A:HIS405 3.3 45.2 1.0
OD1 A:ASP342 3.3 48.0 1.0
CE1 A:HIS405 3.4 48.1 1.0
ND1 A:HIS340 4.1 38.8 1.0
O21 A:PD2701 4.3 44.8 1.0
CG A:HIS340 4.3 45.4 1.0
OH A:TYR328 4.4 48.7 1.0
C3 A:PD2701 4.5 47.0 1.0
ND1 A:HIS405 4.5 47.9 1.0
CG A:HIS405 4.5 48.1 1.0
CB A:ASP342 4.6 59.9 1.0
C5 A:PD2701 4.6 66.2 1.0

Nickel binding site 2 out of 2 in 4diq

Go back to Nickel Binding Sites List in 4diq
Nickel binding site 2 out of 2 in the Crystal Structure of Human NO66


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Human NO66 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni701

b:33.7
occ:1.00
O B:HOH883 2.0 37.3 1.0
O22 B:PD2702 2.1 14.6 1.0
N1 B:PD2702 2.2 22.6 1.0
OD2 B:ASP342 2.2 34.8 1.0
NE2 B:HIS340 2.2 28.5 1.0
NE2 B:HIS405 2.3 27.9 1.0
C6 B:PD2702 3.1 32.1 1.0
C2 B:PD2702 3.1 21.8 1.0
C21 B:PD2702 3.1 25.7 1.0
CE1 B:HIS340 3.1 36.9 1.0
CG B:ASP342 3.2 32.9 1.0
CD2 B:HIS405 3.2 29.8 1.0
CD2 B:HIS340 3.3 44.7 1.0
CE1 B:HIS405 3.3 28.9 1.0
OD1 B:ASP342 3.5 39.5 1.0
O B:HOH856 4.0 46.5 1.0
ND1 B:HIS340 4.3 31.4 1.0
O21 B:PD2702 4.3 23.0 1.0
OH B:TYR328 4.4 40.3 1.0
C5 B:PD2702 4.4 17.6 1.0
CG B:HIS340 4.4 33.8 1.0
C3 B:PD2702 4.4 29.2 1.0
ND1 B:HIS405 4.4 36.0 1.0
CG B:HIS405 4.4 27.7 1.0
CB B:ASP342 4.5 33.1 1.0
C4 B:PD2702 5.0 19.5 1.0

Reference:

M.Vollmar, T.Krojer, N.G.Stan, E.Pilka, C.Phillips, N.Burgess-Brown, J.Bray, A.C.W.Pike, P.Filippakopoulos, A.Roos, C.H.Arrowsmith, A.Edwards, C.Bountra, F.Von Delft, U.Oppermann. Crystal Structure of Human NO66 To Be Published.
Page generated: Wed Dec 16 01:29:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy