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Nickel in PDB 4dun: 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630)

Protein crystallography data

The structure of 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630), PDB code: 4dun was solved by J.S.Brunzelle, W.Wawrzak, M.Kudritska, W.F.Anderson, A.Savchenko, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.12 / 1.76
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.650, 63.650, 135.120, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 19

Nickel Binding Sites:

The binding sites of Nickel atom in the 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630) (pdb code 4dun). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630), PDB code: 4dun:

Nickel binding site 1 out of 1 in 4dun

Go back to Nickel Binding Sites List in 4dun
Nickel binding site 1 out of 1 in the 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630)


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni303

b:17.9
occ:0.80
NE2 A:HIS71 2.0 21.5 1.0
O3 A:BTB302 2.1 15.2 0.8
O6 A:BTB302 2.1 21.4 0.8
O8 A:BTB302 2.1 19.3 0.8
O4 A:BTB302 2.1 17.4 0.8
N A:BTB302 2.4 18.6 0.8
C2 A:BTB302 2.8 25.9 0.8
C6 A:BTB302 2.8 15.5 0.8
C5 A:BTB302 2.8 21.7 0.8
C8 A:BTB302 2.9 15.4 0.8
C3 A:BTB302 2.9 19.0 0.8
C4 A:BTB302 3.0 16.8 0.8
CD2 A:HIS71 3.0 22.4 1.0
C7 A:BTB302 3.0 21.7 0.8
CE1 A:HIS71 3.1 20.6 1.0
O A:HOH560 3.9 36.7 1.0
OD2 A:ASP197 4.0 22.7 1.0
OD1 A:ASP197 4.1 22.4 1.0
CG A:HIS71 4.2 20.5 1.0
ND1 A:HIS71 4.2 21.6 1.0
OE2 A:GLU44 4.3 28.3 1.0
C1 A:BTB302 4.3 29.2 0.8
SG A:CYS69 4.3 19.9 1.0
O1 A:SO4301 4.3 22.2 0.8
CG A:ASP197 4.4 21.6 1.0
O A:HOH563 4.7 18.6 0.3
OE1 A:GLU44 4.7 21.5 1.0
CD A:GLU44 4.8 31.1 1.0
O1 A:BTB302 4.9 29.3 0.8
O A:HOH640 4.9 31.0 1.0
ND2 A:ASN17 5.0 21.1 1.0

Reference:

J.S.Brunzelle, W.Wawrzak, M.Kudritska, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases (Csgid). 1.76A X-Ray Crystal Structure of A Putative Phenazine Biosynthesis Phzc/Phzf Protein From Clostridium Difficile (Strain 630) To Be Published.
Page generated: Fri Sep 25 08:41:07 2020
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