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Nickel in PDB 4dvo: Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
Enzymatic activity of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
All present enzymatic activity of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9:
5.3.1.5;
5.3.1.5;
Protein crystallography data
The structure of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9, PDB code: 4dvo
was solved by
A.Y.Kovalevsky,
L.Hanson,
P.Langan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 2.00 |
| Space group | I 2 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 94.061, 99.428, 102.798, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 19 / 21.4 |
Nickel Binding Sites:
The binding sites of Nickel atom in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
(pdb code 4dvo). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 3 binding sites of Nickel where determined in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9, PDB code: 4dvo:
Jump to Nickel binding site number: 1; 2; 3;
In total 3 binding sites of Nickel where determined in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9, PDB code: 4dvo:
Jump to Nickel binding site number: 1; 2; 3;
Nickel binding site 1 out of 3 in 4dvo
Go back to
Nickel Binding Sites List in 4dvo
Nickel binding site 1 out
of 3 in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9 within 5.0Å range:
|
Nickel binding site 2 out of 3 in 4dvo
Go back to
Nickel Binding Sites List in 4dvo
Nickel binding site 2 out
of 3 in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9 within 5.0Å range:
|
Nickel binding site 3 out of 3 in 4dvo
Go back to
Nickel Binding Sites List in 4dvo
Nickel binding site 3 out
of 3 in the Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Room-Temperature Joint X-Ray/Neutron Structure of D-Xylose Isomerase in Complex with 2NI2+ and Per-Deuterated D-Sorbitol at pH 5.9 within 5.0Å range:
|
Reference:
A.Kovalevsky,
B.L.Hanson,
S.A.Mason,
V.T.Forsyth,
Z.Fisher,
M.Mustyakimov,
M.P.Blakeley,
D.A.Keen,
P.Langan.
Inhibition of D-Xylose Isomerase By Polyols: Atomic Details By Joint X-Ray/Neutron Crystallography. Acta Crystallogr.,Sect.D V. 68 1201 2012.
ISSN: ISSN 0907-4449
PubMed: 22948921
DOI: 10.1107/S0907444912024808
Page generated: Wed Oct 9 18:05:48 2024
ISSN: ISSN 0907-4449
PubMed: 22948921
DOI: 10.1107/S0907444912024808
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