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Nickel in PDB 4er8: Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin

Protein crystallography data

The structure of Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin, PDB code: 4er8 was solved by S.A.J.Messing, B.Ton-Hoang, A.B.Hickman, R.Ghirlando, M.Chandler, F.Dyda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.26 / 2.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.830, 60.300, 70.780, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 28.1

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin (pdb code 4er8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin, PDB code: 4er8:

Nickel binding site 1 out of 1 in 4er8

Go back to Nickel Binding Sites List in 4er8
Nickel binding site 1 out of 1 in the Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of the Rep Associates Tyrosine Transposase Bound to A Rep Hairpin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:38.9
occ:1.00
NE2 A:HIS61 2.0 36.8 1.0
NE2 A:HIS123 2.0 52.0 1.0
NE2 A:HIS59 2.1 35.0 1.0
OE2 A:GLU161 2.1 47.6 1.0
OD1 A:ASN119 2.2 38.8 1.0
OE1 A:GLU161 2.3 47.7 1.0
CD A:GLU161 2.5 46.2 1.0
CD2 A:HIS61 3.0 36.0 1.0
CD2 A:HIS123 3.0 50.0 1.0
CE1 A:HIS61 3.0 34.2 1.0
CE1 A:HIS123 3.0 51.1 1.0
CE1 A:HIS59 3.0 38.4 1.0
CG A:ASN119 3.1 37.3 1.0
CD2 A:HIS59 3.1 37.1 1.0
ND2 A:ASN119 3.4 37.2 1.0
CG A:GLU161 4.0 46.2 1.0
ND1 A:HIS61 4.1 37.4 1.0
CG A:HIS61 4.1 34.9 1.0
ND1 A:HIS123 4.1 49.9 1.0
CG A:HIS123 4.2 49.1 1.0
ND1 A:HIS59 4.2 38.4 1.0
CG A:HIS59 4.2 38.2 1.0
CB A:ASN119 4.5 37.6 1.0
CD1 A:LEU56 4.5 40.8 1.0
OH A:TYR115 4.8 37.1 1.0
CE2 A:TYR115 4.9 34.5 1.0
CB A:GLU161 4.9 45.8 1.0

Reference:

S.A.Messing, B.Ton-Hoang, A.B.Hickman, A.J.Mccubbin, G.F.Peaslee, R.Ghirlando, M.Chandler, F.Dyda. The Processing of Repetitive Extragenic Palindromes: the Structure of A Repetitive Extragenic Palindrome Bound to Its Associated Nuclease. Nucleic Acids Res. V. 40 9964 2012.
ISSN: ISSN 0305-1048
PubMed: 22885300
DOI: 10.1093/NAR/GKS741
Page generated: Fri Sep 25 08:41:43 2020
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