Nickel in PDB 4g1e: Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag.

The structure of Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag., PDB code: 4g1e was solved by X.Dong, L.Mi, J.Zhu, W.Wang, B.Luo, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.52 / 3.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	128.558, 128.558, 352.859, 90.00, 90.00, 120.00
R / Rfree (%)	24.1 / 26.1

The structure of Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag. also contains other interesting chemical elements:

Chlorine	(Cl)	7 atoms
Calcium	(Ca)	6 atoms

The binding sites of Nickel atom in the Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag. (pdb code 4g1e). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag., PDB code: 4g1e:

Nickel binding site 1 out of 1 in the Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag.


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Integrin Alpha V Beta 3 with Coil-Coiled Tag. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni2047 b:0.6 occ:1.00 N A:TYR200 3.3 91.7 1.0 OE2 A:GLU117 3.3 0.6 1.0 CB A:TYR200 3.7 0.4 1.0 CD2 A:TYR200 3.8 0.8 1.0 N A:SER201 3.9 97.3 1.0 CG A:TYR200 4.0 0.6 1.0 OE1 A:GLU117 4.0 0.0 1.0 CA A:TYR200 4.0 99.7 1.0 CD A:GLU117 4.0 0.4 1.0 CA A:VAL199 4.2 87.9 1.0 C A:VAL199 4.2 97.1 1.0 CG1 A:VAL199 4.4 88.7 1.0 C A:TYR200 4.5 0.3 1.0 O A:ASN198 4.6 92.2 1.0 CE2 A:TYR200 4.7 0.8 1.0 CB A:VAL199 4.9 88.9 1.0 CB A:SER201 5.0 98.2 1.0 CD1 A:TYR200 5.0 0.8 1.0 OG A:SER201 5.0 0.5 1.0

X.Dong, L.Z.Mi, J.Zhu, W.Wang, P.Hu, B.H.Luo, T.A.Springer. Alphav BETA3 Integrin Crystal Structures and Their Functional Implications Biochemistry V. 51 8814 2012.
ISSN: ISSN 0006-2960
PubMed: 23106217
DOI: 10.1021/BI300734N