Nickel in PDB 4h9m: The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution

All present enzymatic activity of The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution:
3.5.1.5;

The structure of The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution, PDB code: 4h9m was solved by A.Begum, M.I.Choudhary, C.Betzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.61 / 1.52
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	140.391, 140.391, 198.747, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 19.1

The binding sites of Nickel atom in the The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution (pdb code 4h9m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution, PDB code: 4h9m:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni901 b:11.4 occ:0.90 OQ1 A:KCX490 2.1 13.2 1.0 NE2 A:HIS409 2.1 12.0 1.0 NE2 A:HIS407 2.1 12.7 1.0 O A:HAE929 2.1 14.5 1.0 OD1 A:ASP633 2.1 13.8 1.0 N A:HAE929 2.5 15.3 1.0 CE1 A:HIS409 3.0 12.0 1.0 CE1 A:HIS407 3.0 12.9 1.0 CX A:KCX490 3.0 13.1 1.0 CG A:ASP633 3.1 13.8 1.0 CD2 A:HIS407 3.1 12.6 1.0 CD2 A:HIS409 3.2 12.0 1.0 OQ2 A:KCX490 3.4 13.2 1.0 C2 A:HAE929 3.5 16.2 1.0 OD2 A:ASP633 3.6 14.4 1.0 NI A:NI902 3.6 13.1 0.9 O2 A:HAE929 3.9 17.8 1.0 ND1 A:HIS409 4.1 11.8 1.0 ND1 A:HIS407 4.1 12.8 1.0 NZ A:KCX490 4.2 12.9 1.0 CG A:HIS407 4.2 12.7 1.0 CG2 A:THR442 4.2 12.6 1.0 CG A:HIS409 4.3 11.8 1.0 CB A:ALA636 4.3 14.8 1.0 CB A:ASP633 4.3 13.6 1.0 C1 A:HAE929 4.5 15.8 1.0 CA A:ASP633 4.6 13.3 1.0 CD2 A:HIS545 4.7 13.5 1.0 O A:ALA440 4.8 13.0 1.0 NE2 A:HIS545 4.8 13.6 1.0 CD2 A:TYR544 5.0 13.0 1.0

Nickel binding site 2 out of 2 in the The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni902 b:13.1 occ:0.90 O A:HAE929 2.0 14.5 1.0 OQ2 A:KCX490 2.0 13.2 1.0 ND1 A:HIS519 2.1 13.2 1.0 O2 A:HAE929 2.1 17.8 1.0 NE2 A:HIS545 2.2 13.6 1.0 N A:HAE929 2.7 15.3 1.0 C2 A:HAE929 2.7 16.2 1.0 CD2 A:HIS545 3.0 13.5 1.0 CE1 A:HIS519 3.0 13.3 1.0 CX A:KCX490 3.0 13.1 1.0 CG A:HIS519 3.2 13.2 1.0 CE1 A:HIS545 3.2 13.7 1.0 O A:GLY550 3.3 14.2 1.0 OQ1 A:KCX490 3.4 13.2 1.0 NI A:NI901 3.6 11.4 0.9 CB A:HIS519 3.6 13.1 1.0 NE2 A:HIS492 3.7 13.0 1.0 CD2 A:HIS492 4.1 12.9 1.0 CG A:HIS545 4.2 13.6 1.0 NE2 A:HIS519 4.2 13.4 1.0 NZ A:KCX490 4.2 12.9 1.0 C1 A:HAE929 4.2 15.8 1.0 ND1 A:HIS545 4.2 13.7 1.0 CE1 A:HIS407 4.3 12.9 1.0 CD2 A:HIS519 4.3 13.3 1.0 C A:GLY550 4.3 14.3 1.0 NE2 A:HIS407 4.5 12.7 1.0 CE1 A:HIS492 4.6 13.0 1.0 CE A:KCX490 4.7 12.9 1.0 CA A:HIS519 4.8 13.3 1.0 OD2 A:ASP633 4.9 14.4 1.0

A.Begum, M.I.Choudhary, C.Betzel. The First Jack Bean Urease (Canavalia Ensiformis) Complex Obtained at 1.52 Resolution To Be Published.