Nickel in PDB 4j8l: Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli

The structure of Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli, PDB code: 4j8l was solved by A.A.Fedorov, E.V.Fedorov, D.F.Xiang, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.12 / 1.65
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	134.915, 134.915, 75.142, 90.00, 90.00, 120.00
R / Rfree (%)	16.9 / 19.5

The binding sites of Nickel atom in the Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli (pdb code 4j8l). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli, PDB code: 4j8l:

Nickel binding site 1 out of 1 in the Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni401 b:21.5 occ:1.00 O A:HOH717 1.8 28.7 1.0 O A:HOH716 2.1 27.6 1.0 SG A:CYS336 2.2 21.7 1.0 CB A:CYS336 3.1 18.9 1.0 O A:HIS286 3.4 26.4 1.0 O A:PHE285 3.6 25.0 1.0 C A:GLN287 3.6 20.6 1.0 N A:PRO288 3.6 21.3 1.0 O A:GLN287 3.9 19.9 1.0 C A:HIS286 3.9 26.3 1.0 CA A:PRO288 4.0 22.1 1.0 CD A:PRO288 4.0 23.6 1.0 CA A:GLN287 4.1 24.2 1.0 CA A:CYS336 4.1 18.7 1.0 N A:GLN287 4.2 22.0 1.0 CB A:PRO288 4.3 22.1 1.0 C A:PHE285 4.6 24.5 1.0 O A:HOH657 4.6 31.1 1.0 CG A:PRO288 4.8 23.3 1.0 CA A:HIS286 4.8 22.9 1.0 N A:CYS336 4.9 22.1 1.0

A.A.Fedorov, E.V.Fedorov, D.F.Xiang, F.M.Raushel, S.C.Almo. Crystal Structure of the Pyridoxal-5'-Phosphate Dependent Protein Yhfs From Escherichia Coli To Be Published.