Nickel in PDB 4jz4: Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form
Enzymatic activity of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form
All present enzymatic activity of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form:
2.7.10.2;
Protein crystallography data
The structure of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form, PDB code: 4jz4
was solved by
A.Camara-Artigas,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.73 /
1.56
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.670,
45.358,
58.022,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.1 /
17.6
|
Nickel Binding Sites:
The binding sites of Nickel atom in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form
(pdb code 4jz4). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the
Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form, PDB code: 4jz4:
Jump to Nickel binding site number:
1;
2;
Nickel binding site 1 out
of 2 in 4jz4
Go back to
Nickel Binding Sites List in 4jz4
Nickel binding site 1 out
of 2 in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form
 Mono view
 Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ni201
b:16.9
occ:1.00
|
N
|
A:SER82
|
1.8
|
20.2
|
1.0
|
ND1
|
A:HIS83
|
1.9
|
13.7
|
1.0
|
N
|
A:HIS83
|
1.9
|
17.3
|
1.0
|
N
|
A:GLY81
|
2.0
|
20.7
|
1.0
|
C
|
A:GLY81
|
2.7
|
23.0
|
1.0
|
C
|
A:SER82
|
2.7
|
18.8
|
1.0
|
CA
|
A:SER82
|
2.8
|
20.1
|
1.0
|
CA
|
A:GLY81
|
2.8
|
22.5
|
1.0
|
CG
|
A:HIS83
|
2.9
|
15.2
|
1.0
|
CE1
|
A:HIS83
|
3.0
|
14.7
|
1.0
|
H
|
A:MET84
|
3.0
|
16.2
|
1.0
|
CA
|
A:HIS83
|
3.0
|
16.4
|
1.0
|
HE1
|
A:HIS83
|
3.2
|
17.7
|
1.0
|
HB3
|
A:HIS83
|
3.2
|
18.8
|
1.0
|
CB
|
A:HIS83
|
3.2
|
15.7
|
1.0
|
HA3
|
A:GLY81
|
3.4
|
27.0
|
1.0
|
HG
|
A:SER82
|
3.4
|
28.6
|
1.0
|
HA
|
A:SER82
|
3.4
|
24.1
|
1.0
|
N
|
A:MET84
|
3.6
|
13.5
|
1.0
|
HA2
|
A:GLY81
|
3.6
|
27.0
|
1.0
|
C
|
A:HIS83
|
3.8
|
16.4
|
1.0
|
HA
|
A:HIS83
|
3.8
|
19.7
|
1.0
|
OG
|
A:SER82
|
3.9
|
23.8
|
1.0
|
CB
|
A:SER82
|
3.9
|
24.0
|
1.0
|
O
|
A:GLY81
|
3.9
|
25.5
|
1.0
|
O
|
A:SER82
|
3.9
|
20.4
|
1.0
|
CD2
|
A:HIS83
|
4.0
|
15.9
|
1.0
|
NE2
|
A:HIS83
|
4.0
|
14.7
|
1.0
|
HB2
|
A:HIS83
|
4.2
|
18.8
|
1.0
|
HB3
|
A:SER82
|
4.3
|
28.8
|
1.0
|
O
|
A:HOH372
|
4.4
|
23.9
|
1.0
|
HB3
|
A:MET84
|
4.5
|
18.9
|
1.0
|
HB2
|
A:SER82
|
4.6
|
28.8
|
1.0
|
HB2
|
A:MET84
|
4.7
|
18.9
|
1.0
|
CA
|
A:MET84
|
4.8
|
14.4
|
1.0
|
HE2
|
A:HIS83
|
4.8
|
17.6
|
1.0
|
CB
|
A:MET84
|
4.9
|
15.7
|
1.0
|
HD2
|
A:HIS83
|
4.9
|
19.1
|
1.0
|
O
|
A:HIS83
|
5.0
|
19.6
|
1.0
|
|
Nickel binding site 2 out
of 2 in 4jz4
Go back to
Nickel Binding Sites List in 4jz4
Nickel binding site 2 out
of 2 in the Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form
 Mono view
 Stereo pair view
|
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Crystal Structure of Chicken C-Src-SH3 Domain: Monomeric Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ni201
b:16.6
occ:1.00
|
N
|
B:SER82
|
1.9
|
21.0
|
1.0
|
ND1
|
B:HIS83
|
1.9
|
17.4
|
1.0
|
N
|
B:GLY81
|
1.9
|
19.8
|
1.0
|
N
|
B:HIS83
|
1.9
|
17.9
|
1.0
|
C
|
B:SER82
|
2.8
|
21.2
|
1.0
|
C
|
B:GLY81
|
2.8
|
23.8
|
1.0
|
CA
|
B:GLY81
|
2.9
|
22.5
|
1.0
|
CA
|
B:SER82
|
2.9
|
22.1
|
1.0
|
CG
|
B:HIS83
|
2.9
|
17.5
|
1.0
|
CE1
|
B:HIS83
|
2.9
|
20.2
|
1.0
|
CA
|
B:HIS83
|
3.0
|
16.4
|
1.0
|
HB3
|
B:HIS83
|
3.2
|
20.5
|
1.0
|
HE1
|
B:HIS83
|
3.2
|
24.3
|
1.0
|
CB
|
B:HIS83
|
3.2
|
17.1
|
1.0
|
H
|
B:MET84
|
3.2
|
14.5
|
1.0
|
HA3
|
B:GLY81
|
3.4
|
27.0
|
1.0
|
HA
|
B:SER82
|
3.5
|
26.5
|
1.0
|
HA2
|
B:GLY81
|
3.5
|
27.0
|
1.0
|
HB2
|
B:SER82
|
3.7
|
30.4
|
1.0
|
N
|
B:MET84
|
3.8
|
12.1
|
1.0
|
HA
|
B:HIS83
|
3.8
|
19.7
|
1.0
|
O
|
B:HOH307
|
3.8
|
17.7
|
1.0
|
C
|
B:HIS83
|
3.9
|
14.9
|
1.0
|
CB
|
B:SER82
|
3.9
|
25.4
|
1.0
|
O
|
B:SER82
|
4.0
|
22.5
|
1.0
|
O
|
B:GLY81
|
4.0
|
26.1
|
1.0
|
CD2
|
B:HIS83
|
4.0
|
19.8
|
1.0
|
NE2
|
B:HIS83
|
4.0
|
19.9
|
1.0
|
HB2
|
B:HIS83
|
4.1
|
20.5
|
1.0
|
O
|
B:HOH368
|
4.2
|
27.7
|
1.0
|
HG2
|
B:MET84
|
4.2
|
22.8
|
1.0
|
O
|
B:HOH358
|
4.3
|
44.0
|
1.0
|
HB3
|
B:SER82
|
4.6
|
30.4
|
1.0
|
OG
|
B:SER82
|
4.7
|
29.9
|
1.0
|
HE2
|
B:HIS83
|
4.8
|
23.9
|
1.0
|
HB2
|
B:MET84
|
4.8
|
14.9
|
1.0
|
HD2
|
B:HIS83
|
4.9
|
23.7
|
1.0
|
O
|
B:HIS83
|
5.0
|
14.7
|
1.0
|
|
Reference:
A.Camara-Artigas,
A.Camara-Artigas.
N/A N/A.
Page generated: Wed Oct 9 18:17:29 2024
|