Atomistry » Nickel » PDB 4lto-4ofl » 4lxl
Atomistry »
  Nickel »
    PDB 4lto-4ofl »
      4lxl »

Nickel in PDB 4lxl: Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3

Protein crystallography data

The structure of Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3, PDB code: 4lxl was solved by W.-C.Wang, C.-H.Chu, C.-C.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.67 / 1.87
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.364, 78.475, 83.893, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.2

Other elements in 4lxl:

The structure of Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3 (pdb code 4lxl). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3, PDB code: 4lxl:

Nickel binding site 1 out of 1 in 4lxl

Go back to Nickel Binding Sites List in 4lxl
Nickel binding site 1 out of 1 in the Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:15.8
occ:1.00
OE2 A:GLU191 2.1 14.1 1.0
N1 A:PD2401 2.1 12.5 1.0
O22 A:PD2401 2.1 15.2 1.0
NE2 A:HIS277 2.1 13.9 1.0
NE2 A:HIS189 2.2 14.5 1.0
O A:HOH752 2.2 18.9 1.0
C21 A:PD2401 2.8 15.6 1.0
C2 A:PD2401 2.9 12.9 1.0
CE1 A:HIS277 3.0 13.4 1.0
CD A:GLU191 3.1 18.8 1.0
CE1 A:HIS189 3.1 15.0 1.0
C6 A:PD2401 3.1 16.2 1.0
CD2 A:HIS189 3.1 14.8 1.0
CD2 A:HIS277 3.2 13.9 1.0
OE1 A:GLU191 3.4 18.0 1.0
O21 A:PD2401 4.0 15.9 1.0
O A:HOH511 4.1 18.0 1.0
ND1 A:HIS277 4.2 13.3 1.0
ND1 A:HIS189 4.2 14.3 1.0
C3 A:PD2401 4.2 13.9 1.0
CG A:HIS277 4.3 12.9 1.0
CG A:HIS189 4.3 15.6 1.0
CM3 D:M3L9 4.3 17.0 1.0
C5 A:PD2401 4.4 16.0 1.0
CG A:GLU191 4.4 14.6 1.0
OG A:SER197 4.5 17.5 1.0
C4 A:PD2401 4.9 14.5 1.0

Reference:

W.-C.Wang, C.-H.Chu, C.-C.Chen. Crystal Structure of JMJD2B Complexed with Pyridine-2,4-Dicarboxylic Acid and H3K9ME3 To Be Published.
Page generated: Wed Dec 16 01:32:55 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy