Nickel in PDB 4m58: Crystal Structure of An Transition Metal Transporter

The structure of Crystal Structure of An Transition Metal Transporter, PDB code: 4m58 was solved by Y.Yu, C.Y.Yan, B.Zhang, X.L.Li, J.K.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.06 / 3.21
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	122.727, 122.727, 125.340, 90.00, 90.00, 120.00
R / Rfree (%)	24.5 / 28.7

The binding sites of Nickel atom in the Crystal Structure of An Transition Metal Transporter (pdb code 4m58). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of An Transition Metal Transporter, PDB code: 4m58:

Nickel binding site 1 out of 1 in the Crystal Structure of An Transition Metal Transporter


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of An Transition Metal Transporter within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni301 b:89.5 occ:1.00 N A:HIS2 2.1 0.6 1.0 NE2 A:HIS67 2.2 0.6 1.0 ND1 A:HIS2 2.2 0.6 1.0 N A:MET1 2.2 0.7 1.0 C A:MET1 3.0 0.2 1.0 CA A:MET1 3.0 1.0 1.0 CG A:HIS2 3.0 0.2 1.0 CE1 A:HIS67 3.0 0.2 1.0 CA A:HIS2 3.1 0.7 1.0 CB A:HIS2 3.2 0.1 1.0 CD2 A:HIS67 3.2 0.6 1.0 CE1 A:HIS2 3.2 1.0 1.0 CG A:MET1 3.6 98.0 1.0 SD A:MET113 3.7 98.5 1.0 OG1 A:THR65 3.8 0.5 1.0 CB A:MET1 3.9 1.0 1.0 CE A:MET113 3.9 99.3 1.0 O A:MET1 4.1 0.7 1.0 ND1 A:HIS67 4.2 0.5 1.0 CD2 A:HIS2 4.2 0.5 1.0 NE2 A:HIS2 4.3 0.6 1.0 CG A:HIS67 4.3 0.9 1.0 C A:HIS2 4.4 0.3 1.0 O A:HIS2 4.7 0.7 1.0 O A:THR65 4.8 0.5 1.0

Y.Yu, M.Z.Zhou, F.Kirsch, C.Q.Xu, L.Zhang, Y.Wang, Z.Jiang, N.Wang, J.Li, T.Eitinger, M.J.Yang. Planar Substrate-Binding Site Dictates the Specificity of Ecf-Type Nickel/Cobalt Transporters Cell Res. V. 24 267 2014.
ISSN: ISSN 1001-0602
PubMed: 24366337
DOI: 10.1038/CR.2013.172