Nickel in PDB 4m6o: Crystal Structure of Anti-Ngf Antibody CNTO7309

The structure of Crystal Structure of Anti-Ngf Antibody CNTO7309, PDB code: 4m6o was solved by A.Teplyakov, G.Obmolova, T.Malia, G.L.Gilliland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.80
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	152.600, 152.600, 152.600, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 25

The binding sites of Nickel atom in the Crystal Structure of Anti-Ngf Antibody CNTO7309 (pdb code 4m6o). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Anti-Ngf Antibody CNTO7309, PDB code: 4m6o:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Crystal Structure of Anti-Ngf Antibody CNTO7309


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Anti-Ngf Antibody CNTO7309 within 5.0Å range: probe atom residue distance (Å) B Occ H:Ni303 b:27.8 occ:1.00 NE2 H:HIS228 2.1 58.1 1.0 NE2 H:HIS229 2.2 31.7 1.0 CD2 H:HIS229 2.6 56.1 1.0 CD2 H:HIS228 2.7 71.8 1.0 CE1 H:HIS228 3.2 66.2 1.0 CE1 H:HIS229 3.5 40.6 1.0 CG H:HIS228 4.0 80.9 1.0 CG H:HIS229 4.0 66.7 1.0 ND1 H:HIS228 4.1 80.2 1.0 ND1 H:HIS229 4.3 41.0 1.0

Nickel binding site 2 out of 2 in the Crystal Structure of Anti-Ngf Antibody CNTO7309


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Anti-Ngf Antibody CNTO7309 within 5.0Å range: probe atom residue distance (Å) B Occ H:Ni304 b:53.6 occ:0.33 NE2 H:HIS56 2.7 62.8 1.0 CE1 H:HIS56 3.1 50.0 1.0 CD2 H:HIS56 3.5 58.2 1.0 ND1 H:HIS56 4.1 99.0 1.0 CG H:HIS56 4.3 85.3 1.0

A.Teplyakov, J.Luo, G.Obmolova, T.J.Malia, R.Sweet, R.L.Stanfield, S.Kodangattil, J.C.Almagro, G.L.Gilliland. Antibody Modeling Assessment II. Structures and Models. Proteins V. 82 1563 2014.
ISSN: ISSN 0887-3585
PubMed: 24633955
DOI: 10.1002/PROT.24554