Nickel in PDB 4onr: Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa

The structure of Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa, PDB code: 4onr was solved by D.R.Tomchick, R.K.Deka, J.S.Blevins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.77 / 1.60
Space group	P 43
Cell size a, b, c (Å), α, β, γ (°)	49.524, 49.524, 57.943, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 20.1

The binding sites of Nickel atom in the Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa (pdb code 4onr). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa, PDB code: 4onr:

Nickel binding site 1 out of 1 in the Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Borrelia Burgdorferi Decorin-Binding Protein Dbpa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:48.8 occ:1.00 N A:ALA-2 1.9 52.8 1.0 N A:MET-1 2.0 39.6 1.0 N A:GLY-3 2.3 45.9 1.0 SD A:MET-1 2.3 80.5 1.0 C A:ALA-2 2.8 44.6 1.0 CA A:ALA-2 2.8 44.5 1.0 C A:GLY-3 2.9 52.4 1.0 HB3 A:MET-1 3.0 65.6 1.0 CA A:GLY-3 3.0 55.5 1.0 CA A:MET-1 3.1 56.5 1.0 H A:ASP0 3.2 52.0 1.0 CB A:MET-1 3.3 54.7 1.0 CG A:MET-1 3.3 54.3 1.0 HA A:ALA-2 3.5 53.5 1.0 HA2 A:GLY-3 3.5 66.5 1.0 HB3 A:ALA-2 3.6 68.0 1.0 N A:ASP0 3.7 43.3 1.0 C A:MET-1 3.8 54.1 1.0 HA3 A:GLY-3 3.8 66.5 1.0 CB A:ALA-2 3.8 56.7 1.0 HA A:MET-1 3.8 67.8 1.0 CE A:MET-1 3.9 56.5 1.0 HG2 A:MET-1 3.9 65.1 1.0 HG3 A:MET-1 4.0 65.1 1.0 O A:ALA-2 4.0 43.8 1.0 O A:GLY-3 4.0 64.3 1.0 HE1 A:MET-1 4.0 67.8 1.0 OD1 A:ASP0 4.1 70.4 1.0 HB2 A:MET-1 4.2 65.6 1.0 HB2 A:ALA-2 4.3 68.0 1.0 HE2 A:MET-1 4.4 67.8 1.0 HE3 A:MET-1 4.4 67.8 1.0 HB1 A:ALA-2 4.6 68.0 1.0 HB2 A:ASP0 4.8 60.8 1.0 O A:MET-1 4.9 62.7 1.0 CA A:ASP0 4.9 38.2 1.0 CG A:ASP0 5.0 71.5 1.0

D.E.Fortune, Y.P.Lin, R.K.Deka, A.M.Groshong, B.P.Moore, K.E.Hagman, J.M.Leong, D.R.Tomchick, J.S.Blevins. Identification of Lysine Residues in the Borrelia Burgdorferi Dbpa Adhesin Required For Murine Infection. Infect.Immun. V. 82 3186 2014.
ISSN: ISSN 0019-9567
PubMed: 24842928
DOI: 10.1128/IAI.02036-14