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Nickel in PDB 4q7l: Structure of NBD288 of TM287/288

Protein crystallography data

The structure of Structure of NBD288 of TM287/288, PDB code: 4q7l was solved by M.A.Bukowska, M.Hohl, M.G.Gruetter, M.A.Seeger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.97 / 2.35
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 95.930, 95.930, 88.510, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 23.6

Nickel Binding Sites:

The binding sites of Nickel atom in the Structure of NBD288 of TM287/288 (pdb code 4q7l). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Structure of NBD288 of TM287/288, PDB code: 4q7l:

Nickel binding site 1 out of 1 in 4q7l

Go back to Nickel Binding Sites List in 4q7l
Nickel binding site 1 out of 1 in the Structure of NBD288 of TM287/288


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of NBD288 of TM287/288 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni701

b:64.2
occ:1.00
NE2 B:HIS476 2.3 62.4 1.0
NE2 B:HIS472 2.6 74.3 1.0
CE1 B:HIS476 2.9 63.3 1.0
CE1 B:HIS472 3.4 74.0 1.0
CD2 B:HIS476 3.5 63.5 1.0
CD2 B:HIS472 3.6 73.0 1.0
ND1 B:HIS476 4.2 64.5 1.0
CG B:HIS476 4.5 63.0 1.0
ND1 B:HIS472 4.5 74.1 1.0
CG B:HIS472 4.6 71.2 1.0

Reference:

M.A.Bukowska, M.Hohl, E.R.Geertsma, L.M.Hurlimann, M.G.Grutter, M.A.Seeger. A Transporter Motor Taken Apart: Flexibility in the Nucleotide Binding Domains of A Heterodimeric Abc Exporter. Biochemistry 2015.
ISSN: ISSN 0006-2960
PubMed: 25947941
DOI: 10.1021/ACS.BIOCHEM.5B00188
Page generated: Mon Aug 18 19:37:16 2025

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