Nickel in PDB 4qu1: Crystal Structure of Human JMJD5 Jmj-C Domain

All present enzymatic activity of Crystal Structure of Human JMJD5 Jmj-C Domain:
1.14.11.27;

The structure of Crystal Structure of Human JMJD5 Jmj-C Domain, PDB code: 4qu1 was solved by H.L.Liu, C.Wang, G.Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.84 / 1.57
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.627, 65.030, 77.782, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 17.4

The binding sites of Nickel atom in the Crystal Structure of Human JMJD5 Jmj-C Domain (pdb code 4qu1). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Human JMJD5 Jmj-C Domain, PDB code: 4qu1:

Nickel binding site 1 out of 1 in the Crystal Structure of Human JMJD5 Jmj-C Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Human JMJD5 Jmj-C Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni501 b:15.3 occ:0.78 O2 A:AKG502 2.1 19.8 0.8 OD2 A:ASP323 2.2 15.4 1.0 O5 A:AKG502 2.2 20.3 1.0 O A:HOH623 2.2 23.1 1.0 NE2 A:HIS321 2.2 17.8 1.0 NE2 A:HIS400 2.2 14.7 1.0 C1 A:AKG502 2.8 17.3 0.8 C2 A:AKG502 2.9 15.0 0.7 CE1 A:HIS321 3.0 17.6 0.7 CE1 A:HIS400 3.1 13.3 1.0 CG A:ASP323 3.1 16.4 1.0 HE1 A:HIS321 3.2 21.2 0.7 HE1 A:HIS400 3.2 16.0 1.0 CD2 A:HIS321 3.2 14.4 1.0 CD2 A:HIS400 3.2 13.3 1.0 OD1 A:ASP323 3.4 21.8 1.0 HD2 A:HIS321 3.5 17.2 1.0 HD2 A:HIS400 3.5 15.9 1.0 O A:HOH625 3.8 17.0 0.8 HZ2 A:TRP414 3.8 19.6 0.8 O1 A:AKG502 4.1 16.0 0.7 ND1 A:HIS321 4.2 12.2 0.9 ND1 A:HIS400 4.2 12.3 0.9 HD22 A:ASN327 4.3 18.2 1.0 CG A:HIS321 4.3 14.2 1.0 C3 A:AKG502 4.3 15.1 1.0 CG A:HIS400 4.3 12.1 1.0 HE1 A:TRP414 4.4 21.2 0.8 O A:HOH677 4.5 27.4 0.9 CB A:ASP323 4.5 15.2 1.0 HB2 A:ASP323 4.5 18.3 1.0 CZ2 A:TRP414 4.6 16.4 0.8 HH2 A:TRP310 4.7 14.4 0.9 H42 A:AKG502 4.7 19.9 1.0 H41 A:AKG502 4.8 19.9 1.0 HD21 A:ASN327 4.8 18.2 1.0 H31 A:AKG502 4.8 18.1 1.0 H32 A:AKG502 4.8 18.1 1.0 ND2 A:ASN327 4.9 15.2 1.0 C4 A:AKG502 4.9 16.6 1.0 HD1 A:HIS321 4.9 14.6 0.7 HZ2 A:TRP310 4.9 17.1 0.9 NE1 A:TRP414 5.0 17.7 0.8

H.L.Liu, C.Wang, C.Dege, F.K.Ning, J.Weisz, K.Hansen, J.Y.Zang, C.H.Pan, P.Marrack, J.Kappler, J.Hagmen, G.Y.Zhang. The Histone Arginine Demethylase JMJD5 To Be Published.