Nickel in PDB 4qu2: The Structure of JMJD7 with Alpha-Kg

The structure of The Structure of JMJD7 with Alpha-Kg, PDB code: 4qu2 was solved by H.L.Liu, C.Wang, G.Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.71 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.535, 59.516, 199.583, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 25.7

The binding sites of Nickel atom in the The Structure of JMJD7 with Alpha-Kg (pdb code 4qu2). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the The Structure of JMJD7 with Alpha-Kg, PDB code: 4qu2:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the The Structure of JMJD7 with Alpha-Kg


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Structure of JMJD7 with Alpha-Kg within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni501 b:23.2 occ:1.00 O5 A:AKG502 2.5 28.5 0.8 NE2 A:HIS178 2.5 27.3 1.0 NE2 A:HIS277 2.6 20.8 1.0 O2 A:AKG502 2.7 24.2 0.6 OD2 A:ASP180 2.8 31.1 1.0 CE1 A:HIS178 2.8 26.3 1.0 C1 A:AKG502 2.9 19.7 1.0 C2 A:AKG502 3.0 21.8 1.0 CE1 A:HIS277 3.4 22.4 1.0 CD2 A:HIS277 3.7 25.9 1.0 O1 A:AKG502 3.8 23.3 0.7 CD2 A:HIS178 3.8 24.7 1.0 CG A:ASP180 3.9 36.7 1.0 ND1 A:HIS178 4.1 24.0 1.0 CZ2 A:TRP291 4.3 43.3 1.0 C3 A:AKG502 4.4 21.2 0.9 ND1 A:HIS277 4.6 22.1 1.0 CG A:HIS178 4.6 25.9 1.0 CB A:ASP180 4.7 26.5 1.0 OD1 A:ASP180 4.7 49.8 1.0 CG A:HIS277 4.8 26.3 1.0 C4 A:AKG502 4.9 19.2 1.0

Nickel binding site 2 out of 2 in the The Structure of JMJD7 with Alpha-Kg


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of The Structure of JMJD7 with Alpha-Kg within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni501 b:22.9 occ:1.00 OD2 B:ASP180 2.4 33.1 1.0 O5 B:AKG502 2.4 23.9 1.0 NE2 B:HIS277 2.5 17.0 1.0 NE2 B:HIS178 2.5 21.5 1.0 O2 B:AKG502 2.6 24.2 0.9 C2 B:AKG502 3.1 20.4 0.3 C1 B:AKG502 3.1 20.3 0.9 CG B:ASP180 3.2 27.6 1.0 CE1 B:HIS277 3.2 24.2 1.0 OD1 B:ASP180 3.3 30.7 1.0 CD2 B:HIS178 3.4 18.2 1.0 CE1 B:HIS178 3.5 21.0 1.0 CD2 B:HIS277 3.6 22.3 1.0 NE2 B:GLN131 3.7 40.0 1.0 O B:HOH624 3.8 22.1 1.0 CZ2 B:TRP291 4.2 29.2 1.0 O1 B:AKG502 4.2 16.1 0.9 ND1 B:HIS277 4.4 17.3 1.0 C3 B:AKG502 4.6 19.1 0.5 CG B:HIS178 4.6 20.3 1.0 ND1 B:HIS178 4.6 21.3 1.0 CB B:ASP180 4.6 22.1 1.0 CG B:HIS277 4.7 20.5 1.0 C4 B:AKG502 4.9 16.6 1.0 CH2 B:TRP291 4.9 34.2 1.0 CD B:GLN131 5.0 43.9 1.0

H.L.Liu, C.Wang, C.Dege, F.K.Ning, J.Weisz, K.Hansen, Z.Z.Chen, C.H.Pan, C.W.Nho, J.Nix, P.Marrack, J.Kappler, J.Hagmen, G.Y.Zhang. The Structure of JMJD7 with Alpha-Kg To Be Published.