Nickel in PDB 4rt5: The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776

All present enzymatic activity of The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776:
4.4.1.5;

The structure of The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776, PDB code: 4rt5 was solved by R.Wu, J.Bearden, Y.Kim, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.79 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	30.130, 77.496, 45.827, 90.00, 109.19, 90.00
R / Rfree (%)	15.1 / 18

The binding sites of Nickel atom in the The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776 (pdb code 4rt5). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776, PDB code: 4rt5:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:13.0 occ:1.00 NE2 A:HIS69 2.0 11.8 1.0 O2 A:TRS202 2.1 37.8 1.0 OE2 A:GLU104 2.2 14.5 1.0 NE2 A:HIS18 2.2 14.1 1.0 C2 A:TRS202 2.3 32.4 1.0 O3 A:TRS202 2.5 23.1 1.0 O A:HOH360 2.6 9.1 1.0 CE1 A:HIS69 2.9 9.7 1.0 CE1 A:HIS18 3.0 7.9 1.0 CD2 A:HIS69 3.1 9.8 1.0 C3 A:TRS202 3.1 29.8 1.0 CD A:GLU104 3.3 18.9 1.0 C A:TRS202 3.3 34.8 1.0 CD2 A:HIS18 3.3 14.1 1.0 OE1 A:GLU104 3.6 20.8 1.0 ND1 A:HIS69 4.1 10.4 1.0 O A:HOH313 4.2 22.6 1.0 CG A:HIS69 4.2 11.8 1.0 ND1 A:HIS18 4.2 10.0 1.0 N A:TRS202 4.3 33.6 1.0 C1 A:TRS202 4.4 38.5 1.0 CG A:HIS18 4.4 13.4 1.0 NE2 A:HIS66 4.6 12.0 0.4 CG A:GLU104 4.6 15.4 1.0 O A:HOH350 4.6 24.7 1.0 O1 A:TRS202 4.6 37.2 1.0 OH A:TYR94 4.6 34.4 1.0 CE2 A:TYR94 4.6 29.6 1.0 CB A:ALA71 4.7 8.5 1.0 CB A:GLU104 4.8 13.1 1.0 O A:HOH357 5.0 26.6 1.0

Nickel binding site 2 out of 2 in the The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni201 b:15.0 occ:1.00 O2 B:TRS202 2.0 32.2 1.0 NE2 B:HIS18 2.1 17.8 1.0 NE2 B:HIS69 2.2 13.6 1.0 OE1 B:GLU104 2.3 16.0 1.0 C1 B:TRS202 2.4 21.7 1.0 O1 B:TRS202 2.5 22.1 1.0 CE1 B:HIS18 2.8 16.5 1.0 C2 B:TRS202 2.8 33.5 1.0 CE1 B:HIS69 3.0 12.2 1.0 C B:TRS202 3.2 32.3 1.0 CD2 B:HIS18 3.3 13.0 1.0 CD B:GLU104 3.3 16.8 1.0 CD2 B:HIS69 3.4 10.8 1.0 OE2 B:GLU104 3.6 21.1 1.0 ND1 B:HIS18 4.0 17.0 1.0 ND1 B:HIS69 4.2 10.9 1.0 N B:TRS202 4.2 32.6 1.0 CG B:HIS18 4.3 8.5 1.0 O B:HOH351 4.3 21.2 1.0 C3 B:TRS202 4.3 40.8 1.0 CG B:HIS69 4.4 10.2 1.0 O3 B:TRS202 4.6 45.6 1.0 CG B:GLU104 4.7 12.2 1.0 CB B:ALA71 4.7 9.4 1.0 CE1 B:HIS66 4.8 18.4 0.6 OH B:TYR94 4.9 48.6 1.0 CB B:GLU104 4.9 10.8 1.0 O B:HOH331 4.9 33.4 1.0 O B:HOH347 5.0 30.0 1.0

R.Wu, J.Bearden, Y.Kim, A.Joachimiak. The Crystal Structure of A Glyoxalase/Bleomycin Resistance Protein/Dioxygenase Protein From Planctomyces Limnophilus Dsm 3776 To Be Published.