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Nickel in PDB 4rtz: Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12

Enzymatic activity of Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12

All present enzymatic activity of Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12, PDB code: 4rtz was solved by A.Camara-Artigas, J.Bacarizo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.04 / 0.98
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.904, 41.046, 44.066, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 15.8

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12 (pdb code 4rtz). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12, PDB code: 4rtz:

Nickel binding site 1 out of 1 in 4rtz

Go back to Nickel Binding Sites List in 4rtz
Nickel binding site 1 out of 1 in the Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of the C-Src-SH3 Domain in Complex with the High Affinity Peptide VSL12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni201

b:9.8
occ:1.00
 N A:SER82 1.8 10.7 1.0
N A:HIS83 1.9 9.4 1.0
N A:GLY81 1.9 11.7 1.0
ND1 A:HIS83 1.9 11.4 1.0
C A:GLY81 2.7 11.7 1.0
C A:SER82 2.8 9.1 1.0
CA A:GLY81 2.8 12.0 1.0
CA A:SER82 2.8 9.7 1.0
CG A:HIS83 2.9 12.3 1.0
CE1 A:HIS83 2.9 13.4 1.0
CA A:HIS83 3.0 9.7 1.0
HE1 A:HIS83 3.1 16.1 1.0
CB A:HIS83 3.2 11.3 1.0
HB3 A:HIS83 3.3 13.6 1.0
HA2 A:GLY81 3.4 14.4 1.0
HA A:SER82 3.4 11.6 1.0
HA3 A:GLY81 3.5 14.4 1.0
O A:HIS83 3.6 11.0 1.0
HG A:SER82 3.6 12.0 1.0
O A:HOH335 3.7 37.6 1.0
C A:HIS83 3.7 9.6 1.0
HA A:HIS83 3.7 11.6 1.0
O A:GLY81 3.9 13.5 1.0
O A:SER82 4.0 9.9 1.0
CB A:SER82 4.0 10.3 1.0
NE2 A:HIS83 4.0 15.6 1.0
O A:HOH303 4.0 13.6 1.0
CD2 A:HIS83 4.0 14.6 1.0
OG A:SER82 4.0 10.0 1.0
HB2 A:HIS83 4.2 13.6 1.0
HB3 A:SER82 4.4 12.4 1.0
HB2 A:SER82 4.7 12.4 1.0
HE2 A:HIS83 4.8 18.7 1.0
HD2 A:HIS83 4.9 17.5 1.0
N A:MET84 5.0 9.1 1.0

Reference:

A.Camara-Artigas, A.Camara-Artigas, J.Bacarizo. N/A N/A.
Page generated: Wed Oct 9 19:10:01 2024

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