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Nickel in PDB 4rzx: Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7

Enzymatic activity of Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7

All present enzymatic activity of Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7:
2.7.4.9;

Protein crystallography data

The structure of Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7, PDB code: 4rzx was solved by A.Biswas, J.Jeyakanthan, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.934, 63.222, 138.565, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 25.9

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 (pdb code 4rzx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7, PDB code: 4rzx:

Nickel binding site 1 out of 1 in 4rzx

Go back to Nickel Binding Sites List in 4rzx
Nickel binding site 1 out of 1 in the Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni302

b:51.3
occ:1.00
O A:HOH410 1.8 41.8 1.0
NE2 A:HIS67 2.1 46.4 1.0
NZ A:LYS50 2.1 53.7 1.0
NE2 A:HIS46 2.2 46.5 1.0
O A:HOH409 2.3 52.7 1.0
CE A:LYS50 2.8 53.7 1.0
CE1 A:HIS67 3.0 44.0 1.0
CD2 A:HIS46 3.0 43.0 1.0
CD2 A:HIS67 3.2 49.7 1.0
CE1 A:HIS46 3.3 46.6 1.0
CD A:LYS50 3.9 53.3 1.0
ND1 A:HIS67 4.1 42.9 1.0
CG A:HIS67 4.2 47.8 1.0
CG A:HIS46 4.3 45.0 1.0
OG A:SER42 4.3 68.0 1.0
ND1 A:HIS46 4.4 45.6 1.0
CZ A:PHE63 4.7 42.9 0.5
CE1 A:PHE63 4.9 48.0 0.5

Reference:

A.Biswas, J.Jeyakanthan, K.Sekar. Crystal Structure (Type-3) of Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 To Be Published.
Page generated: Wed Dec 16 01:35:10 2020

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