Nickel in PDB 4ug1: Gpsb N-Terminal Domain

The structure of Gpsb N-Terminal Domain, PDB code: 4ug1 was solved by J.Rismondo, R.M.Cleverley, H.V.Lane, S.Grohennig, A.Steglich, L.Muller, G.Krishna Mannala, T.Hain, R.J.Lewis, S.Halbedel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.593 / 1.60
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	39.186, 39.186, 164.561, 90.00, 90.00, 120.00
R / Rfree (%)	17.43 / 21.47

The binding sites of Nickel atom in the Gpsb N-Terminal Domain (pdb code 4ug1). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Gpsb N-Terminal Domain, PDB code: 4ug1:

Nickel binding site 1 out of 1 in the Gpsb N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Gpsb N-Terminal Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1069 b:14.4 occ:1.00 N1 A:IMD1070 2.1 13.2 1.0 O A:GLY-2 2.1 15.2 1.0 N A:GLY-2 2.1 14.7 1.0 C A:GLY-2 2.8 14.0 1.0 CA A:GLY-2 2.9 14.7 1.0 C5 A:IMD1070 3.1 12.9 1.0 C2 A:IMD1070 3.1 15.3 1.0 O A:HOH2005 3.9 26.1 1.0 N A:SER-1 4.1 16.9 1.0 N3 A:IMD1070 4.2 14.8 1.0 C4 A:IMD1070 4.2 13.4 1.0 C A:SER-1 4.8 15.0 1.0 CA A:SER-1 4.9 14.0 0.5 CA A:SER-1 4.9 14.9 0.5 CB A:HIS0 4.9 13.8 1.0 O A:SER-1 5.0 17.3 1.0

J.Rismondo, R.M.Cleverley, H.V.Lane, S.Grosshennig, A.Steglich, L.Moller, G.K.Mannala, T.Hain, R.J.Lewis, S.Halbedel. Structure of the Bacterial Cell Division Determinant Gpsb and Its Interaction with Penicillin Binding Proteins. Mol.Microbiol. V. 99 978 2016.
ISSN: ISSN 0950-382X
PubMed: 26575090
DOI: 10.1111/MMI.13279