Nickel in PDB 4um8: Crystal Structure of Alpha V Beta 6

The structure of Crystal Structure of Alpha V Beta 6, PDB code: 4um8 was solved by X.Dong, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.656 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	184.450, 170.010, 102.390, 90.00, 98.68, 90.00
R / Rfree (%)	23.84 / 28.08

The structure of Crystal Structure of Alpha V Beta 6 also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Arsenic	(As)	2 atoms
Chlorine	(Cl)	3 atoms
Calcium	(Ca)	10 atoms

The binding sites of Nickel atom in the Crystal Structure of Alpha V Beta 6 (pdb code 4um8). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Alpha V Beta 6, PDB code: 4um8:

Nickel binding site 1 out of 1 in the Crystal Structure of Alpha V Beta 6


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Alpha V Beta 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1599 b:97.5 occ:1.00 ND1 A:HIS591 2.0 94.8 1.0 CG A:HIS591 2.8 80.0 1.0 CE1 A:HIS591 3.0 91.8 1.0 CB A:HIS591 3.1 74.7 1.0 CD2 A:HIS591 4.0 76.2 1.0 NE2 A:HIS591 4.0 78.9 1.0 CA A:HIS591 4.3 69.8 1.0 O A:ILE592 4.5 0.2 1.0 N A:ILE592 4.6 98.3 1.0 C A:HIS591 4.9 83.8 1.0

X.Dong, N.E.Hudson, C.Lu, T.A.Springer. Structural Determinants of Integrin Beta-Subunit Specificity For Latent Tgf-Beta Nat.Struct.Mol.Biol. 2014.
ISSN: ESSN 1545-9985
PubMed: 25383667
DOI: 10.1038/NSMB.2905