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Nickel in PDB 4upv: Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
Enzymatic activity of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
All present enzymatic activity of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant:
1.12.2.1;
1.12.2.1;
Protein crystallography data
The structure of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant, PDB code: 4upv
was solved by
A.Volbeda,
L.Martin,
E.Barbier,
O.Gutierrez-Sanz,
A.L.Delacey,
P.P.Liebgott,
S.Dementin,
M.Rousset,
J.C.Fontecilla-Camps,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 1.52 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 64.690, 100.850, 116.700, 90.00, 105.96, 90.00 |
| R / Rfree (%) | 12.001 / 15.39 |
Other elements in 4upv:
The structure of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Iron | (Fe) | 24 atoms |
| Chlorine | (Cl) | 2 atoms |
Nickel Binding Sites:
The binding sites of Nickel atom in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
(pdb code 4upv). This binding sites where shown within
5.0 Angstroms radius around Nickel atom.
In total 4 binding sites of Nickel where determined in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant, PDB code: 4upv:
Jump to Nickel binding site number: 1; 2; 3; 4;
In total 4 binding sites of Nickel where determined in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant, PDB code: 4upv:
Jump to Nickel binding site number: 1; 2; 3; 4;
Nickel binding site 1 out of 4 in 4upv
Go back to
Nickel Binding Sites List in 4upv
Nickel binding site 1 out
of 4 in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 1 of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant within 5.0Å range:
|
Nickel binding site 2 out of 4 in 4upv
Go back to
Nickel Binding Sites List in 4upv
Nickel binding site 2 out
of 4 in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 2 of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant within 5.0Å range:
|
Nickel binding site 3 out of 4 in 4upv
Go back to
Nickel Binding Sites List in 4upv
Nickel binding site 3 out
of 4 in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 3 of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant within 5.0Å range:
|
Nickel binding site 4 out of 4 in 4upv
Go back to
Nickel Binding Sites List in 4upv
Nickel binding site 4 out
of 4 in the Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Nickel with other atoms in the Ni binding
site number 4 of Low X-Ray Dose Structure of A Ni-A Ni-Sox Mixture of the D. Fructosovorans Nife-Hydrogenase L122A Mutant within 5.0Å range:
|
Reference:
A.Volbeda,
L.Martin,
E.Barbier,
O.Gutierrez-Sanz,
A.L.De Lacey,
P.Liebgott,
S.Dementin,
M.Rousset,
J.C.Fontecilla-Camps.
Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures For the Elusive Unready Oxidized States. J.Biol.Inorg.Chem. 2014.
ISSN: ESSN 1432-1327
PubMed: 25315838
DOI: 10.1007/S00775-014-1203-9
Page generated: Wed Oct 9 19:14:33 2024
ISSN: ESSN 1432-1327
PubMed: 25315838
DOI: 10.1007/S00775-014-1203-9
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