Nickel in PDB 4uwx: Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain

The structure of Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain, PDB code: 4uwx was solved by J.Brenig, S.De Boor, P.Knyphausen, N.Kuhlmann, S.Wroblowski, L.Baldus, L.Scislowski, O.Artz, P.Trauschies, U.Baumann, I.Neundorf, M.Lammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.317 / 1.65
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	121.090, 49.381, 106.370, 90.00, 97.86, 90.00
R / Rfree (%)	17.55 / 21.01

The binding sites of Nickel atom in the Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain (pdb code 4uwx). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain, PDB code: 4uwx:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in the Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni1369 b:23.1 occ:1.00 OE2 A:GLU142 2.1 21.6 1.0 O3 A:1441370 2.1 29.7 1.0 O2 A:1441370 2.2 26.9 1.0 O4 A:1441370 2.2 25.4 1.0 NE2 A:HIS151 2.2 16.3 1.0 CD A:GLU142 3.0 29.2 1.0 C4 A:1441370 3.0 28.6 1.0 C2 A:1441370 3.1 28.0 1.0 CD2 A:HIS151 3.1 16.8 1.0 N A:1441370 3.2 36.0 1.0 OE1 A:GLU142 3.2 34.2 1.0 CE1 A:HIS151 3.2 17.9 1.0 C3 A:1441370 3.3 41.8 1.0 O A:HOH2020 3.9 27.5 1.0 CG A:HIS151 4.3 17.2 1.0 ND1 A:HIS151 4.3 17.3 1.0 CG A:GLU142 4.3 25.1 1.0 C1 A:1441370 4.7 34.4 1.0

Nickel binding site 2 out of 2 in the Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Structure of Liprin-ALPHA3 in Complex with MDIA1 Diaphanous- Inhibitory Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ni1370 b:22.9 occ:1.00 OE2 B:GLU142 2.1 25.6 1.0 NE2 B:HIS151 2.1 19.2 1.0 ND1 A:HIS324 2.2 22.2 1.0 O4 B:1441371 2.2 24.5 1.0 O2 B:1441371 2.2 27.6 1.0 C3 B:1441371 2.3 29.8 1.0 O3 B:1441371 2.5 50.6 1.0 N B:1441371 2.9 32.9 1.0 C4 B:1441371 3.0 29.0 1.0 CE1 A:HIS324 3.0 22.1 1.0 CD2 B:HIS151 3.0 18.4 1.0 CD B:GLU142 3.1 33.7 1.0 C2 B:1441371 3.1 30.6 1.0 CE1 B:HIS151 3.1 21.1 1.0 CG A:HIS324 3.2 20.9 1.0 OE1 B:GLU142 3.4 30.0 1.0 CB A:HIS324 3.6 20.3 1.0 O A:HOH2157 4.0 47.2 1.0 NE2 A:HIS324 4.2 21.0 1.0 CG B:HIS151 4.2 19.2 1.0 ND1 B:HIS151 4.2 20.9 1.0 CA A:HIS324 4.3 19.2 1.0 O A:HOH2160 4.3 32.1 1.0 CD2 A:HIS324 4.3 21.1 1.0 C1 B:1441371 4.4 35.4 1.0 CG B:GLU142 4.4 34.3 1.0 CD2 B:LEU147 5.0 38.2 1.0

J.Brenig, S.De Boor, P.Knyphausen, N.Kuhlmann, S.Wroblowski, L.Baldus, L.Scislowski, O.Artz, P.Trauschies, U.Baumann, I.Neundorf, M.Lammers. Structural and Biochemical Basis For the Inhibitory Effect of Liprin-ALPHA3 on Mouse Diaphanous 1 (MDIA1) Function. J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
PubMed: 25911102
DOI: 10.1074/JBC.M114.621946