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Nickel in PDB 4w6u: Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group

Protein crystallography data

The structure of Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group, PDB code: 4w6u was solved by D.J.Leibly, G.S.Waldo, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 82.99 / 2.28
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.640, 116.580, 165.980, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group (pdb code 4w6u). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total 2 binding sites of Nickel where determined in the Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group, PDB code: 4w6u:
Jump to Nickel binding site number: 1; 2;

Nickel binding site 1 out of 2 in 4w6u

Go back to Nickel Binding Sites List in 4w6u
Nickel binding site 1 out of 2 in the Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:70.7
occ:1.00
O A:HOH405 2.1 63.4 1.0
NE2 A:HIS25 2.3 49.9 1.0
O A:HOH403 2.3 59.9 1.0
CE1 A:HIS25 3.2 49.2 1.0
CD2 A:HIS25 3.3 45.3 1.0
OE2 A:GLU132 4.1 97.7 1.0
ND1 A:HIS25 4.3 48.1 1.0
CG A:HIS25 4.4 46.0 1.0
O A:ASN23 4.6 47.2 1.0

Nickel binding site 2 out of 2 in 4w6u

Go back to Nickel Binding Sites List in 4w6u
Nickel binding site 2 out of 2 in the Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 2 of Crystal Structure of Full-Length Split Gfp Mutant E115H/T118H with Nickel Mediated Crystal Contacts, P 21 21 21 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ni301

b:63.6
occ:1.00
O B:HOH415 2.5 29.4 1.0
NE2 B:HIS115 2.9 47.2 1.0
CD2 B:HIS115 3.5 46.5 1.0
CE1 B:HIS115 4.1 46.5 1.0
CG B:HIS115 4.8 39.8 1.0

Reference:

D.J.Leibly, M.A.Arbing, I.Pashkov, N.Devore, G.S.Waldo, T.C.Terwilliger, T.O.Yeates. Engineering Novel Oligomeric Gfp Molecules For Synthetic Symmetrization Applications To Be Published.
Page generated: Wed Dec 16 01:37:42 2020

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