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Nickel in PDB 4wa3: The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals

Protein crystallography data

The structure of The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals, PDB code: 4wa3 was solved by H.Yang, J.M.Villanueva, L.V.Gubareva, J.Stevens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.20 / 1.80
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 90.816, 90.816, 110.449, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 17.4

Other elements in 4wa3:

The structure of The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals (pdb code 4wa3). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals, PDB code: 4wa3:

Nickel binding site 1 out of 1 in 4wa3

Go back to Nickel Binding Sites List in 4wa3
Nickel binding site 1 out of 1 in the The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of The Crystal Structure of Neuraminidase From A H3N8 Influenza Virus Isolated From New England Harbor Seals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni504

b:51.8
occ:1.00
O A:HOH701 2.2 30.5 1.0
O A:HOH694 2.3 31.7 1.0
O A:HOH679 4.3 29.2 1.0
HE A:ARG171 4.5 24.2 1.0
HD3 A:ARG171 4.5 24.0 1.0
O A:HOH748 4.6 32.2 1.0
NE A:ARG171 4.6 20.2 1.0
HG3 A:ARG171 4.7 20.4 1.0
O A:HOH686 4.8 43.5 1.0
CZ A:ARG171 5.0 20.3 1.0
HH11 A:ARG171 5.0 25.9 1.0

Reference:

H.Yang, H.T.Nguyen, P.J.Carney, Z.Guo, J.C.Chang, J.Jones, C.T.Davis, J.M.Villanueva, L.V.Gubareva, J.Stevens. Structural and Functional Analysis of Surface Proteins From An A(H3N8) Influenza Virus Isolated From New England Harbor Seals. J.Virol. 2014.
ISSN: ESSN 1098-5514
PubMed: 25540377
DOI: 10.1128/JVI.02723-14
Page generated: Wed Dec 16 01:37:40 2020

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