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Nickel in PDB 4whi: Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907

Protein crystallography data

The structure of Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907, PDB code: 4whi was solved by C.Chang, C.Hatzos-Skintges, R.Jedrzejczak, A.Joachimiak, Midwest Centerfor Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.17 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.305, 49.839, 59.345, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 20.5

Other elements in 4whi:

The structure of Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907 also contains other interesting chemical elements:

Bromine (Br) 16 atoms

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907 (pdb code 4whi). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907, PDB code: 4whi:

Nickel binding site 1 out of 1 in 4whi

Go back to Nickel Binding Sites List in 4whi
Nickel binding site 1 out of 1 in the Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni617

b:26.6
occ:1.00
O A:HOH742 1.8 30.0 1.0
O A:HOH733 2.0 20.3 1.0
O A:HOH709 2.1 32.2 1.0
O A:SER431 2.2 29.6 1.0
N A:SER431 2.4 25.3 1.0
C A:SER431 3.0 23.4 1.0
CA A:SER431 3.1 20.0 1.0
CB A:SER431 3.9 15.4 1.0
N A:ASN432 4.2 25.5 1.0
O A:HOH711 4.4 31.4 1.0
C A:ASN432 4.9 21.8 1.0
CA A:ASN432 4.9 23.8 1.0
O A:ASN432 4.9 24.8 1.0
OG A:SER431 5.0 20.9 1.0

Reference:

C.Chang, C.Hatzos-Skintges, R.Jedrzejczak, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of C-Terminal Domain of Penicillin Binding Protein RV0907 To Be Published.
Page generated: Wed Dec 16 01:37:40 2020

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