Nickel in PDB 4x9m: Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound

The structure of Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound, PDB code: 4x9m was solved by C.K.Elkhal, K.M.Kean, D.Parsonage, A.Claiborne, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.90 / 2.40
Space group	P 2 3
Cell size a, b, c (Å), α, β, γ (°)	111.590, 111.590, 111.590, 90.00, 90.00, 90.00
R / Rfree (%)	14.8 / 20.4

The binding sites of Nickel atom in the Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound (pdb code 4x9m). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound, PDB code: 4x9m:

Nickel binding site 1 out of 1 in the Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Oxidized L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni402 b:36.8 occ:0.33 NE2 A:HIS59 2.1 26.9 1.0 O A:HOH541 2.2 18.0 0.3 CE1 A:HIS59 2.9 27.6 1.0 CD2 A:HIS59 3.1 28.1 1.0 ND1 A:HIS59 4.0 28.7 1.0 CG A:HIS59 4.1 30.4 1.0 CB A:PRO58 4.8 30.6 1.0

C.K.Elkhal, K.Kean, D.Parsonage, S.Maenpuen, P.Chaiyen, A.Claiborne, P.A.Karplus. Structure and Proposed Mechanism of Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae. Febs J. 2015.
ISSN: ISSN 1742-464X
PubMed: 25688572
DOI: 10.1111/FEBS.13233