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Nickel in PDB 4x9n: Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound

Protein crystallography data

The structure of Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound, PDB code: 4x9n was solved by C.K.Elkhal, K.M.Kean, D.Parsonage, A.Claiborne, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.80 / 2.50
Space group P 2 3
Cell size a, b, c (Å), α, β, γ (°) 111.605, 111.605, 111.605, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 21

Nickel Binding Sites:

The binding sites of Nickel atom in the Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound (pdb code 4x9n). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound, PDB code: 4x9n:

Nickel binding site 1 out of 1 in 4x9n

Go back to Nickel Binding Sites List in 4x9n
Nickel binding site 1 out of 1 in the Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Dithionite Reduced L-Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae with Fad Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni402

b:51.1
occ:0.33
O A:HOH538 1.9 35.8 0.3
NE2 A:HIS59 2.1 40.6 1.0
CE1 A:HIS59 2.9 40.7 1.0
CD2 A:HIS59 3.2 41.7 1.0
ND1 A:HIS59 4.0 41.3 1.0
CG A:HIS59 4.1 42.0 1.0
CB A:PRO58 4.8 43.2 1.0

Reference:

C.K.Elkhal, K.Kean, D.Parsonage, S.Maenpuen, P.Chaiyen, A.Claiborne, P.A.Karplus. Structure and Proposed Mechanism of Alpha-Glycerophosphate Oxidase From Mycoplasma Pneumoniae. Febs J. 2015.
ISSN: ISSN 1742-464X
PubMed: 25688572
DOI: 10.1111/FEBS.13233
Page generated: Wed Dec 16 01:37:40 2020

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