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Nickel in PDB 4xab: Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca

Protein crystallography data

The structure of Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca, PDB code: 4xab was solved by K.M.Mcculloch, E.K.Mccranie, M.Sarwar, J.L.Mathieu, B.L.Gitschlag, Y.Du, B.O.Bachmann, T.M.Iverson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.04 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.612, 65.803, 84.462, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 20.4

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca (pdb code 4xab). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca, PDB code: 4xab:

Nickel binding site 1 out of 1 in 4xab

Go back to Nickel Binding Sites List in 4xab
Nickel binding site 1 out of 1 in the Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of EVDO2 From Micromonospora Carbonacea Var. Aurantiaca within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni301

b:16.6
occ:1.00
O A:HOH534 2.0 22.8 1.0
N3 A:IMD302 2.0 27.0 1.0
N1 A:IMD303 2.0 14.6 0.9
NE2 A:HIS129 2.0 16.9 1.0
OD1 A:ASP131 2.1 13.7 1.0
NE2 A:HIS215 2.1 15.0 1.0
C5 A:IMD303 2.9 21.6 0.9
CE1 A:HIS129 2.9 18.8 1.0
CE1 A:HIS215 2.9 14.7 1.0
C4 A:IMD302 3.0 35.0 1.0
C2 A:IMD302 3.0 39.1 1.0
CG A:ASP131 3.0 16.5 1.0
CD2 A:HIS129 3.1 15.5 1.0
CD2 A:HIS215 3.1 16.6 1.0
C2 A:IMD303 3.1 27.7 0.9
OD2 A:ASP131 3.4 18.6 1.0
ND1 A:HIS129 4.1 15.8 1.0
ND1 A:HIS215 4.1 13.4 1.0
C4 A:IMD303 4.1 26.2 0.9
N1 A:IMD302 4.2 40.1 1.0
C5 A:IMD302 4.2 35.1 1.0
CG A:HIS129 4.2 15.7 1.0
CG A:HIS215 4.2 15.5 1.0
N3 A:IMD303 4.2 27.1 0.9
NE2 A:HIS209 4.4 21.1 1.0
CB A:ASP131 4.4 16.3 1.0
O A:HOH493 4.6 34.4 1.0
CA A:ASP131 4.7 14.7 1.0
N A:ASP131 4.9 14.8 1.0

Reference:

K.M.Mcculloch, E.K.Mccranie, J.A.Smith, M.Sarwar, J.L.Mathieu, B.L.Gitschlag, Y.Du, B.O.Bachmann, T.M.Iverson. Oxidative Cyclizations in Orthosomycin Biosynthesis Expand the Known Chemistry of An Oxygenase Superfamily. Proc.Natl.Acad.Sci.Usa V. 112 11547 2015.
ISSN: ESSN 1091-6490
PubMed: 26240321
DOI: 10.1073/PNAS.1500964112
Page generated: Wed Dec 16 01:37:40 2020

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