Nickel in PDB 4y5u: Transcription Factor

The structure of Transcription Factor, PDB code: 4y5u was solved by J.Li, F.Niu, S.Ouyang, Z.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.36 / 2.71
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.152, 94.322, 179.362, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 25.3

The binding sites of Nickel atom in the Transcription Factor (pdb code 4y5u). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Transcription Factor, PDB code: 4y5u:

Nickel binding site 1 out of 1 in the Transcription Factor


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Transcription Factor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni701 b:11.7 occ:1.00 O A:HOH808 1.7 5.7 1.0 O A:HOH815 1.8 6.4 1.0 O A:HOH816 1.9 7.6 1.0 ND2 A:ASN466 3.6 1.8 1.0 CB A:ASN466 3.8 3.4 1.0 N A:ASN466 4.0 3.8 1.0 OG A:SER534 4.2 5.7 1.0 CG A:ASN466 4.2 3.0 1.0 CB A:SER534 4.5 4.1 1.0 CA A:ASN466 4.5 2.2 1.0 OG1 A:THR465 4.8 2.9 1.0 O A:HOH885 4.9 13.7 1.0

J.Li, J.P.Rodriguez, F.Niu, M.Pu, J.Wang, L.W.Hung, Q.Shao, Y.Zhu, W.Ding, Y.Liu, Y.Da, Z.Yao, J.Yang, Y.Zhao, G.H.Wei, G.Cheng, Z.J.Liu, S.Ouyang. Structural Basis For Dna Recognition By STAT6 Proc.Natl.Acad.Sci.Usa V. 113 13015 2016.
ISSN: ESSN 1091-6490
PubMed: 27803324
DOI: 10.1073/PNAS.1611228113