Atomistry » Nickel » PDB 4z8g-5bnc » 4zxh
Atomistry »
  Nickel »
    PDB 4z8g-5bnc »
      4zxh »

Nickel in PDB 4zxh: Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii

Protein crystallography data

The structure of Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii, PDB code: 4zxh was solved by E.J.Drake, B.R.Miller, C.L.Allen, A.M.Gulick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.80 / 2.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 116.187, 116.187, 348.607, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 23.4

Other elements in 4zxh:

The structure of Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii also contains other interesting chemical elements:

Potassium (K) 1 atom

Nickel Binding Sites:

The binding sites of Nickel atom in the Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii (pdb code 4zxh). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii, PDB code: 4zxh:

Nickel binding site 1 out of 1 in 4zxh

Go back to Nickel Binding Sites List in 4zxh
Nickel binding site 1 out of 1 in the Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Holo-AB3403 A Four Domain Nonribosomal Peptide Synthetase From Acinetobacter Baumanii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ni1404

b:50.9
occ:1.00
N A:HIS0 1.7 78.7 1.0
ND1 A:HIS0 2.1 52.5 1.0
CB A:HIS0 2.2 70.0 1.0
CA A:HIS0 2.3 68.8 1.0
CG A:HIS0 2.4 59.5 1.0
C A:GLY-1 2.6 81.1 1.0
CA A:GLY-1 3.3 74.3 1.0
N A:GLY-1 3.4 53.2 1.0
CE1 A:HIS0 3.4 47.4 1.0
O A:GLY-1 3.5 77.0 1.0
C A:HIS0 3.5 58.7 1.0
CD2 A:HIS0 3.7 54.1 1.0
N A:MET1 4.1 85.2 1.0
NE2 A:HIS0 4.1 47.9 1.0
O A:HIS0 4.4 62.7 1.0
CD2 A:PHE94 4.6 66.7 1.0
CB A:PHE94 4.8 44.6 1.0

Reference:

E.J.Drake, B.R.Miller, C.Shi, J.T.Tarrasch, J.A.Sundlov, C.L.Allen, G.Skiniotis, C.C.Aldrich, A.M.Gulick. Structures of Two Distinct Conformations of Holo-Non-Ribosomal Peptide Synthetases. Nature V. 529 235 2016.
ISSN: ESSN 1476-4687
PubMed: 26762461
DOI: 10.1038/NATURE16163
Page generated: Wed Dec 16 01:38:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy