Nickel in PDB 5c4p: Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing

The structure of Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing, PDB code: 5c4p was solved by S.Venkadesh, M.Yoshinaga, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.28 / 1.97
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	42.843, 42.843, 118.176, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 26.5

The binding sites of Nickel atom in the Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing (pdb code 5c4p). This binding sites where shown within 5.0 Angstroms radius around Nickel atom.
In total only one binding site of Nickel was determined in the Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing, PDB code: 5c4p:

Nickel binding site 1 out of 1 in the Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing


Mono view


Stereo pair view

A full contact list of Nickel with other atoms in the Ni binding site number 1 of Crystal Structure of Arsi C-As Lyase Solved By Ni-Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:Ni201 b:40.9 occ:1.00 OE2 A:GLU117 1.9 31.6 1.0 O A:HOH331 2.0 33.1 1.0 OE1 A:GLN8 2.2 24.9 0.5 NE2 A:HIS65 2.2 24.7 1.0 O A:HOH313 2.2 30.8 1.0 O A:HOH311 2.3 43.4 1.0 OE1 A:GLN8 2.4 28.0 0.5 CD A:GLU117 3.1 35.1 1.0 CD A:GLN8 3.1 24.3 0.5 CD2 A:HIS65 3.1 22.7 1.0 CE1 A:HIS65 3.2 25.1 1.0 CD A:GLN8 3.2 27.8 0.5 NE2 A:GLN8 3.3 24.4 0.5 NE2 A:GLN8 3.4 27.9 0.5 OE1 A:GLU117 3.6 41.6 1.0 O A:HOH345 4.3 48.7 1.0 CG A:GLU117 4.3 28.0 1.0 ND1 A:HIS65 4.3 25.9 1.0 CG A:HIS65 4.3 25.5 1.0 O A:HOH340 4.3 39.1 1.0 O A:HOH348 4.4 62.4 1.0 CG A:GLN8 4.5 22.3 0.5 CG A:GLN8 4.6 26.4 0.5 NZ A:LYS105 4.8 47.5 1.0 CB A:ALA10 4.9 21.2 1.0

S.Venkadesh, M.Yoshinaga, P.Kandavelu, B.P.Rosen. Crystal Structure of Arsi C-As Lyase From Thermomonospora Curvata To Be Published.